Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2100 ATGGTAGAATGCAACTCCAAGCTAGATGTTGCACTGACCATGAGAGATGAGTGTTTTTTACTTGTCGTTAACTGGAGGAATGGGGTCAATTTAATTCACAATCAGCTTGTTTCACATGGGCTGTTCGAAGTGCACGTGAGGGCTTCTGGTGACATCCACATTGATGAGCATCACACAATTGGAGATGTTGCTCTCGCCACTGGAACGGCTCTTGGTGATAGGAAAGGTATTAACCGGTTTGATAACTTCCCGGCTTCAATTGATACAGCGTCAATACATGTTTCCCTGGTCTTCAATAATAGGCTTCTGCTCCCCTCCTATGCGAGGATCCTCTGTTCAGGTGATGACCCAAGTGGAACAGTAGTAAAGAATAGAAAAAATGCAGAAAATTATCAACAAAAGGCTGGAACGCAACACGATTTTTCCAAAGGTGATGACCCAGTGCACGAATAA 453 0.4393 MVECNSKLDVALTMRDECFLLVVNWRNGVNLIHNQLVSHGLFEVHVRASGDIHIDEHHTIGDVALATGTALGDRKGINRFDNFPASIDTASIHVSLVFNNRLLLPSYARILCSGDDPSGTVVKNRKNAENYQQKAGTQHDFSKGDDPVHE 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2100 150 PANTHER IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 34 104 IPR000807 GO:0000105|GO:0004424
Dere03g2100 150 Pfam Imidazoleglycerol-phosphate dehydratase 34 105 IPR000807 GO:0000105|GO:0004424
Dere03g2100 150 SUPERFAMILY Ribosomal protein S5 domain 2-like 34 72 IPR020568 -
Dere03g2100 150 Gene3D Imidazole glycerol phosphate dehydratase; domain 1 29 78 IPR038494 -
Dere03g2100 150 MobiDBLite consensus disorder prediction 123 138 - -
Dere03g2100 150 MobiDBLite consensus disorder prediction 119 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2100 Dere-ChrDere03 33172606 33174666 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2100 1 40 PHD Transcription Factor Family AT4G14920 52.500 5.35e-07 46.2