Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2062 ATGGAGTTTCAGAAGCGCCAAGATCAGAGCCTCCCCGAGAGGAAGGGCCAGAAGCGGAAGCTGGAGGAGGATTTCCAAGACGAACGAGAGATCTCGGCGCCTCCCACCGGCGACGCCCGAGACGCCCTTCTCGCCGAGGTCACCACGCAGGTTGAAATCCTCGAATCCAATTTCTCATGGCGTGAAGCCGATCGAGCCGCGGCTAAGCGCGCCACTCACGTACTCGCCGAGCTTGCCAAGAATGAGGAAGTAGTGAACGTGATTGTTGAAGGAGGCGCTATTCCGGCTTTGGTCAAGCATCTTCAGGCGCCGCCATCGAGTGAAAACGATCGTGGGCAAAAGCCATTTGAGCACGAGGTCGAGAAAGGGAGTGCTTTCGCTTTAGGACTGCTTGCCGTCAAGCCAGAGCATCAACAACTTATTGTTGATAATGGTGCCTTAAAACATCTTGTTGATCTGTTAAAGAGACATAAGAATTGCTCTACTTCCCGTGCCGTGAATAGTGTCATTCGTAGGGCTGCTGATGCAATCACCAATCTTGCTCATGAGAACAGCAGCATTAAAACCCATGTCAGGATGGAAGGTGGAATTCCACCACTTGTTGAGTTGCTTGAATTTACTGATATGAAGGTGCAGAGAGCAGCTGCTGGTGCACTGCGAACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCAACTCTAATTTTAATGCTCCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTAATTGGAAATCTGGTACACTCTTCTCCTAATATAAAAAAAGAAGTCCTTCTTGCTGGGGCTTTACAACCTGTTATTGGGTTACTTAGCTCCTGCTGCTCTGAGAGCCAAAGGGAAGCTGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGTAAGGTTCACATTGTTCAGAGAGGTGCTGTCCGACCTCTGATAGACATGCTCCAGTCCCCTGATGTACAACTCAGAGAAATGTCTGCCTTTGCTTTGGGAAGACTGGCACAGGACACCCATAACCAAGCTGGTATTGCGCACAATGGTGGCTTAGTGCCATTACTTAAGCTCCTTGACTCGAAAAATGGGTCTTTACAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCTGATTTCATTAGGGTAGGTGGTGTTCAAAGACTTCAAGATGGAGAGTTTATTGTTCAAGCAACAAAAGATTGCGTTGCAAAGACATTGAAAAGATTAGAGGAGAAGATTCATGGCCGTGTCCTGAATCATTTGTTATATCTTATGCGGGTTTCAGAAAAGGCTGTTCAAAGACGAGTTGCTTTGGCTCTTGCTCATCTTTGTTCTGCAGATGATCAGAGAACCATATTCATTGATAACAATGGTTTGGATTTTCTTATTGGGCTTCTTGGCTCTTCTAGTCCTAAGCAGCAACTTGATGGTGCTGTTGCCTTATGCAAGTTGGCCAATAAAGCCATGACTCTGTCACCCATAGATGCTGCTCCTCCTTCTCCAACACCTCAGGTTTACTTGGGTGAGCAGTATGTAAACAATGCTACGTTGTCTGATGTTACATTTTTGGTTGAAGGGAAACGGTTCTATGCTCACAGAATCTGCCTACTTGCGTCTTCTGATGCATTTCGTGCTATGTTTGATGGTGGTTACAGAGAAAAGGATGCAAAAGACATAGAGATTCCAAATATTAGATGGGAGGTTTTTGAGCTGATGATGAGATTCATATATACTGGATCAGTTGATATTACTCTTGATATTGCTCAAGATCTCCTCCGAGCAGCTGATCAATATCTTTTAGAAGGACTTAAGAGACTTTGTGAGTACACGATAGCACAGGATATATCACTGGAGAATGTGTCAAGTATGTATGAACTTTCAGAAGCCTTCAATGCAATATCATTGAGGCACACATGCAACCTTTTTATCTTGGAGCAGTTTGATAAATTGAGTGCCAAACCAGGGCACTCTTGTCTGGTTCAGCGTATAATACCAGAGATCCGAAATTACTTTGCGAAAGCACTTACGAAAGCTAACTCCCGTGACATCCGGCTGTAG 2118 0.4481 MEFQKRQDQSLPERKGQKRKLEEDFQDEREISAPPTGDARDALLAEVTTQVEILESNFSWREADRAAAKRATHVLAELAKNEEVVNVIVEGGAIPALVKHLQAPPSSENDRGQKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALKHLVDLLKRHKNCSTSRAVNSVIRRAADAITNLAHENSSIKTHVRMEGGIPPLVELLEFTDMKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIDMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAVQRRVALALAHLCSADDQRTIFIDNNGLDFLIGLLGSSSPKQQLDGAVALCKLANKAMTLSPIDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDAKDIEIPNIRWEVFELMMRFIYTGSVDITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCNLFILEQFDKLSAKPGHSCLVQRIIPEIRNYFAKALTKANSRDIRL 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2062 705 Gene3D - 47 412 IPR011989 -
Dere03g2062 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 195 230 IPR000225 GO:0005515
Dere03g2062 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 321 363 IPR000225 GO:0005515
Dere03g2062 705 Pfam Armadillo/beta-catenin-like repeat 310 349 IPR000225 GO:0005515
Dere03g2062 705 Pfam Armadillo/beta-catenin-like repeat 226 265 IPR000225 GO:0005515
Dere03g2062 705 Pfam Armadillo/beta-catenin-like repeat 188 223 IPR000225 GO:0005515
Dere03g2062 705 Pfam Armadillo/beta-catenin-like repeat 135 165 IPR000225 GO:0005515
Dere03g2062 705 FunFam Armadillo/beta-catenin repeat family protein 529 673 - -
Dere03g2062 705 SMART BTB_4 538 635 IPR000210 GO:0005515
Dere03g2062 705 SUPERFAMILY ARM repeat 60 409 IPR016024 -
Dere03g2062 705 MobiDBLite consensus disorder prediction 1 39 - -
Dere03g2062 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 362 404 IPR000225 GO:0005515
Dere03g2062 705 SUPERFAMILY POZ domain 530 632 IPR011333 -
Dere03g2062 705 Gene3D Potassium Channel Kv1.1; Chain A 519 664 IPR011333 -
Dere03g2062 705 Pfam BTB/POZ domain 531 633 IPR000210 GO:0005515
Dere03g2062 705 CDD BTB_POZ_ARIA_plant 525 640 - -
Dere03g2062 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 146 IPR000225 GO:0005515
Dere03g2062 705 SMART arm_5 351 391 IPR000225 GO:0005515
Dere03g2062 705 SMART arm_5 310 350 IPR000225 GO:0005515
Dere03g2062 705 SMART arm_5 268 308 IPR000225 GO:0005515
Dere03g2062 705 SMART arm_5 466 506 IPR000225 GO:0005515
Dere03g2062 705 SMART arm_5 184 224 IPR000225 GO:0005515
Dere03g2062 705 SMART arm_5 134 182 IPR000225 GO:0005515
Dere03g2062 705 SMART arm_5 226 266 IPR000225 GO:0005515
Dere03g2062 705 SMART arm_5 81 133 IPR000225 GO:0005515
Dere03g2062 705 ProSiteProfiles BTB domain profile. 538 605 IPR000210 GO:0005515
Dere03g2062 705 SUPERFAMILY ARM repeat 436 507 IPR016024 -
Dere03g2062 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 279 IPR000225 GO:0005515
Dere03g2062 705 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 699 IPR044282 -
Dere03g2062 705 Gene3D - 415 513 IPR011989 -
Dere03g2062 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 145 195 IPR000225 GO:0005515
Dere03g2062 705 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2062 Dere-ChrDere03 32769581 32777660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2062 184 390 U-box Gene Family AT5G67340 28.846 1.69e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dere03g2062 BTB 2.1e-26 CL0033