Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2055 ATGGCTCAGCTGCAGAGTCAACAGCAGCAGCAGCCACCCATCGACCATGCCCAGAAGACCAAGACACTCATTTGTGCCCTCAACCTTGTCTCCCGTAACCTCCCTCTGCCTCCTGACCTGTTCAACACCGTTTCTTCCATCTATCACGGCGCCGAAGATGCTTCAAGTAATGGTCATGACTGCGAGGTCTCTGATGGCTGTGCCGGTGGACCCGGATCTGATGAGAAACAGGTGGATGCGCCCGCCAACAAGGGTTTGGATAATATAGGGAATTCTAGAGAAGATTTGTTAACAGATCTTGAAGATGCACTAGTGAAACAACGTCCAAATTTTGTGTCAGGTTCCAAGTTGAAGGAAGAAAGGGAAAACCGCTATCAGAGTCAGATTCAGCATCGGTTAAATGATCTTGAAGAATTACCTTCAAGCAGGGGAGAGGACCTGCAGACAAAGTGCCTGCTTGAACTATATGGACTGAAGCTAGCAGAGTTGCAGAGGAAGGTTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGTTAAATGTGCATATCCTGACAGGCAATTGTTTGACTGGGGAATGATGCGGTTGCGTCGTCCTATGTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATCAGTTACGGAAGAAACGAGATGCTGAGAGATTGTCAAAATTAGAAGAGGAGGAAAAGAATCATATAGAGACCAGAAAAAGGAAATTTTTTGCGGAAGTCCTCAATGCTGTTCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAACGGAGAAAACAGAGAAATGACGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACAAGGGCTGAGAAATTGAGGTTCCAAGCCTTAAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAAAATGAAAGATTGACTATGCTTCTTGAAGAAACAAATAAGTTACTTGTAAATTTGGGAGCAGCTGTTCAACGTCAAAAGGACTCAAAACAAACTGATGGCATTGAACCTTTGGAAGATTCAGAAGCTGATGTACCAGAGTCAGATGCTTCAAAGAATGGAATATCTAAGGAATCACCTCCTGAGGATGATTCTGATATGATTGATTCTGATCATAATGGTGACACTAGTGATTTACTTGAAGGTCAACGGCAATACAACTCGGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAACCTACTATTCTTCAAGGTGGAGAGTTAAGACCATATCAGCTAGAAGGGCTTCAGTGGATGCTTTCATTGTTTAATAACAACCTAAATGGAATTTTGGCTGATGAAATGGGGCTGGGGAAAACAATACAGACAATTTCTTTGATAGCATATCTTATGGAGAACAAGGGTGTGACTGGTCCCCACTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGATCAATGAATTCTCAACATGGGTTCCAAGCATTACAACTGTTCTTTATGATGGGCGGCTGGATGAGAGGAAAGTAATGAAGGAAGAAATATCAGGAGAGGGGAAGTTTAATGTTCTAATAACACACTATGATCTTATAATGAGAGATAAGGCATTTCTCAAGAAAATTCACTGGTACTACTTGATTGTGGACGAAGGGCATCGGTTGAAGAATCATGAGTGTGCTTTAGCAAGAACCCTTGACTCTGGTTATAACATCCAGCGCAGACTCCTGCTGACTGGCACCCCTATTCAGAACAGTTTGCAGGAATTGTGGTCCCTCCTTAATTTTCTCCTTCCAAACATTTTCAATTCGGTTCAAAATTTCGAGGACTGGTTTAATGCCCCATTTGCTGATCGAGTTGATGTCTCTCTAACAGATGAAGAACAGCTATTGATCATTCGTCGTCTGCATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAGAAAGATGAGGTGGAAAAATATCTTCCAGGGAAATCTCAGGTCATTCTTAAATGTGATATGTCGTCATGGCAGAAAGTATATTATCAACAAGTGACTGACTTGGGCAGAGTTGGCTTGGACAATGGTTCTGGGAAATCAAGAAGTCTACAGAATTTGACAATGCAACTTAGAAAGTGTTGTAATCATCCCTACCTCTTTGTGGGAGAACATAATATGTGGAACAAGGATGAGATTGTCAGAGCAGCAGGGAAGTTTGAACTCCTTGACCGTTTGCTCCCAAAACTTCGCAGAACTGGGCACAGAGTCCTTCTGTTCTCACAAATGACTCGTCTCATGGATATTCTTGAAATTTATCTTCGACTTCATGATTTCAAGTTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGGACTCTGCTGCGACAATTTAATGCTCCTGACTCTCCATACTTCATGTTTCTTTTGAGCACCCGTGCTGGAGGTCTTGGTCTAAACTTACAAACAGCAGATACTGTTATTATTTTTGACAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGATCGAGCTCATCGCATTGGACAAAAGAAAGAAGTAAGGGTTTTTGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTGGAGCGTGCAAAACAGAAGATGGGCATTGATGCTAAAGTCATCCAGGCAGGACTTTTTAACACAACTTCAACAGCTCAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGTAGAGGCACAAGCTCACTTGGGACAGATGTACCAAGTGAGAGAGAAATCAACCGCCTTGCAGCCCGATCAGATGAAGAATTTTGGTTGTTCGAGAGAATGGATGAAGAAAGAAGGCAGAAGGAGAATTACAGATCACGCCTCATGGAAGAACATGAGGTGCCAGATTGGGTATACTCTGCAGCAGCTAATAAGGAGGATAAGGCCAAAGGTTTTGATGTTAACAGTGTTGCTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTGAGTGATCTACAATGGATGAAGGCTGTGGAGAATGGGGAAGATGTGGCAAAGCTTTCGGTTAAAGGAAGAAGAAGAGACCACCTGCTATCTGACAACAACACAATTGCTAGTGACAACGTCGGAGCTGAAGAAAGTTTATCAGAGGTACAGAATGAAAGCTTCTCCGTGGCCAAGGAGAGATCAATCGAAGATTCTTTCCACGTGACCCCTGGTCCTGCTCCAAAGCGACTCCGGGCTGATGGAATAAATATGCAGAAACATGAATACGAGGGCATCAGAGGAAGTGGTTTGAATGAGCATGTGTTTTCCTGGAATACACATAGGAGGAAAAGATCAAGCAATATTGCCCAGAGCTCATCATTATCTGATTCTAGAGGGCAGAATTCAACTGGAAGATCAAACTGGAGCTGA 3378 0.429 MAQLQSQQQQQPPIDHAQKTKTLICALNLVSRNLPLPPDLFNTVSSIYHGAEDASSNGHDCEVSDGCAGGPGSDEKQVDAPANKGLDNIGNSREDLLTDLEDALVKQRPNFVSGSKLKEERENRYQSQIQHRLNDLEELPSSRGEDLQTKCLLELYGLKLAELQRKVRSDVSSEYWLNVKCAYPDRQLFDWGMMRLRRPMYGVGDPFAMDADDQLRKKRDAERLSKLEEEEKNHIETRKRKFFAEVLNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTMLLEETNKLLVNLGAAVQRQKDSKQTDGIEPLEDSEADVPESDASKNGISKESPPEDDSDMIDSDHNGDTSDLLEGQRQYNSAIHSIQEKVTEQPTILQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWINEFSTWVPSITTVLYDGRLDERKVMKEEISGEGKFNVLITHYDLIMRDKAFLKKIHWYYLIVDEGHRLKNHECALARTLDSGYNIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSSWQKVYYQQVTDLGRVGLDNGSGKSRSLQNLTMQLRKCCNHPYLFVGEHNMWNKDEIVRAAGKFELLDRLLPKLRRTGHRVLLFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGTLLRQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFERMDEERRQKENYRSRLMEEHEVPDWVYSAAANKEDKAKGFDVNSVAGKRKRKEVVYADTLSDLQWMKAVENGEDVAKLSVKGRRRDHLLSDNNTIASDNVGAEESLSEVQNESFSVAKERSIEDSFHVTPGPAPKRLRADGINMQKHEYEGIRGSGLNEHVFSWNTHRRKRSSNIAQSSSLSDSRGQNSTGRSNWS 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2055 1125 SMART helicmild6 756 840 IPR001650 -
Dere03g2055 1125 MobiDBLite consensus disorder prediction 364 386 - -
Dere03g2055 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 642 IPR027417 -
Dere03g2055 1125 MobiDBLite consensus disorder prediction 1096 1125 - -
Dere03g2055 1125 Pfam Snf2-ATP coupling, chromatin remodelling complex 929 995 IPR029295 GO:0042393
Dere03g2055 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 894 IPR027417 -
Dere03g2055 1125 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 730 897 IPR001650 -
Dere03g2055 1125 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 429 595 IPR014001 -
Dere03g2055 1125 PANTHER SNF2/RAD54 HELICASE FAMILY 120 1026 - -
Dere03g2055 1125 MobiDBLite consensus disorder prediction 333 387 - -
Dere03g2055 1125 Gene3D - 386 641 IPR038718 -
Dere03g2055 1125 SMART ultradead3 413 606 IPR014001 -
Dere03g2055 1125 Coils Coil 931 951 - -
Dere03g2055 1125 CDD SF2_C_SNF 718 851 - -
Dere03g2055 1125 Pfam Helicase conserved C-terminal domain 727 840 IPR001650 -
Dere03g2055 1125 Coils Coil 211 231 - -
Dere03g2055 1125 Gene3D - 648 947 IPR027417 -
Dere03g2055 1125 MobiDBLite consensus disorder prediction 52 76 - -
Dere03g2055 1125 FunFam Probable ATP-dependent DNA helicase CHR12 648 946 - -
Dere03g2055 1125 SMART SnAC_2 933 995 IPR029295 GO:0042393
Dere03g2055 1125 MobiDBLite consensus disorder prediction 1097 1125 - -
Dere03g2055 1125 Pfam SNF2-related domain 420 708 IPR000330 GO:0005524|GO:0140658
Dere03g2055 1125 FunFam Chromatin structure-remodeling complex protein SYD 408 651 - -
Dere03g2055 1125 MobiDBLite consensus disorder prediction 1046 1067 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2055 Dere-ChrDere03 32665385 32675436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2055 399 867 RAD5 or RAD16-like Gene Family AT1G02670 26.868 1.54e-31 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere03g2055 SNF2_N 6.8e-69 CL0023