Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2047 ATGGATGCTCTTTTACCTCCGCAGCTTCTTCCCCTTTCCCATGAGAAGCCAACTCCTACTTGTTTTCTTTCCAATTCACAAAGCCATACCCTTAAATTTTTCTATTCCATCAACCGCACCAACCCTGCTTCCCGCCTTATCTCGAAGTTCAGAACTCCACAATCCCTTTTAAATGACTCTTCCATGACCCTCGAAGCAGTTGATAGAGCTTGCTCTCCCACGTTAAGGGAAATGTGCAAAGCTCATGTTCCCCAGCATATATTGGACAGGATGGAAGAGATTGGATATGTCATGCCTACAGATGTCCAGAGGCAAGCATTGCCTTCTCTTTTATCTGGTCGTGATTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACACTTACTTACCTGCTTCTGATATATTCCGTCATAAACACTGCAAAATCTTCTGTGCAAGCTCTTGTTGTGGTGCCCACCCGTGAACTCGGCATGCAAGTTGCTAAAGTTGCTAGGATCTTGGCAGCAAGGCCAACAGGGGTTGAGGAGGAGCAGAAGTCGTGTACCATCATGGCTCTTTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCTCCAGCGATAGTGGTAGCAACAGTGGGGAGTTTGTGCCACATGGTTGAAAGACAATATTTTAGGCTTGAAACTGTGCAGGTGCTGGTAGTTGATGAGGTTGACTTTATTTTCAATTCTTCGAAGCAAGTCAGTTCTCTTCGAAAGCTCTTGACTTCATATTCATCCTGCAATACCCGTCAAACAGTTTTTGCCAGTGCATCTATACCACAGCACAGACGATTTCTTCATGATTGCATGCAGCAGAAATGGACTAAGAGTGATGTGGTCCATATTCATGTCAGCCCAGTTGAACCCATGCCGTCACGCCTACATCATAGATTTATAGAATGCCATCGCAAAACGAAACAACAAACCCTGTTATCTTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGGTGAGCAGTCTGAGAAGTCAAAAAGGGCTGGAAATGCTCCATCTACATCCCTTCTGATTGACTTTCTGAAGACTTCGTATCAAGGTTCTTTAGATATCCTCCTTCTTGAGGAAGACATGAATTTCAATTCACGAGCAGTTTCACTGTTGGAGGTTAGGAAAGGAGGAGGATATCTTCTTGTAGCAACAGATATAGCTGCCAGAGGAGTTGACCTTCCAGAAATGTCTCACATATACAACTTTGATCTGCCTAGGACTGCCATAGATTATCTTCATCGGGCGGGGAGGACTTGTAGGAAACCCTTTTCTGATATGAAATGTACTGTTACCACTATTATAGTTCCAGAGGAGCGATTTGTTCTACAGAAATATGAAAATGAGTTAATGTTCAATTGTGAAGAGCTTACTTCGTAA 1428 0.4356 MDALLPPQLLPLSHEKPTPTCFLSNSQSHTLKFFYSINRTNPASRLISKFRTPQSLLNDSSMTLEAVDRACSPTLREMCKAHVPQHILDRMEEIGYVMPTDVQRQALPSLLSGRDCILHAQTGSGKTLTYLLLIYSVINTAKSSVQALVVVPTRELGMQVAKVARILAARPTGVEEEQKSCTIMALLDGGTLRRHKSWLKAEPPAIVVATVGSLCHMVERQYFRLETVQVLVVDEVDFIFNSSKQVSSLRKLLTSYSSCNTRQTVFASASIPQHRRFLHDCMQQKWTKSDVVHIHVSPVEPMPSRLHHRFIECHRKTKQQTLLSLIQSDAPESGIIFVGEQSEKSKRAGNAPSTSLLIDFLKTSYQGSLDILLLEEDMNFNSRAVSLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDMKCTVTTIIVPEERFVLQKYENELMFNCEELTS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2047 475 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 475 IPR001650 -
Dere03g2047 475 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 76 466 - -
Dere03g2047 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 442 IPR027417 -
Dere03g2047 475 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 107 289 IPR014001 -
Dere03g2047 475 Pfam Helicase conserved C-terminal domain 320 437 IPR001650 -
Dere03g2047 475 CDD SF2_C_DEAD 306 437 - -
Dere03g2047 475 SMART helicmild6 355 439 IPR001650 -
Dere03g2047 475 Gene3D - 302 473 IPR027417 -
Dere03g2047 475 SMART ultradead3 95 309 IPR014001 -
Dere03g2047 475 Pfam DEAD/DEAH box helicase 100 273 IPR011545 GO:0003676|GO:0005524
Dere03g2047 475 CDD DEADc 87 280 - -
Dere03g2047 475 Gene3D - 39 287 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2047 Dere-ChrDere03 32567601 32574455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2047 95 475 Eukaryotic Initiation Factors Gene Family AT1G72730 27.062 5.01e-30 119