LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere03g2046	ATGGATAATTTAACTTCTTCTCCTTCTTCTTCTCCTCCTCTTCCTCCACCTCCAACTCTTTCTGACATTGTGTCCACTTCAGCTCCATCGTCTTCTACTGCTTTCGACGACGGTTCTGAGGACTCCTGCAGTATTTGTTTAGAGCCCTTCAGCACCGATGACCCAGCTACTATAACCAATTGCAAACATGAGTATCATCTGCACTGTATTCTTGAATGGTCTCAGAGAAGCAAAGAGTGCCCTATCTGTTGGCAGTCGCTTGCCTTAAAAGACCCAGCCAACCAAGAACTTCTAGCTGCAGTGGAGGCTGAAAAACAATTGAGATCAAGAAGCTCATATTCATCTGCATTCCCTTATTCTCGTATCCCCCTTGAACAGCTTAATGCTGAACATGATGATTCTTGTTCAGATGACTCTGATTTTGATGAACAAATTATGCAGCACCTAGTTGCTGCTGCAAGTAGAGTTCATTATATTCGCAGAAGGGAAAGGCAAAGATCATCTGGAGCAGGTCCATCTGAGATTCCTGTTGTTGACTCTTCTGTGCATGTGTCTGGGACACAACCAGTGCTTAAAACTTCACCTTCTGGAGGTAGTTCGCCAATTTCTGGTATAACTATTGCTGCCAACACTCGACCTTCACCATCTAGTCTTACCACTGTTGATGCCATTGCTAGAAATTCTACTCCTGAAACTGATGTCCCTTTCAAAGCCAGAGTTCTTTATAGCGAGCCACCCTCTGAGAGTGTGAGAAGACTGAACACTTCTGAGATGTTCTCCTTCCCTGAGTCCATAAAATCCAAATTTTCTGCTGCTTCAACCAGATATAAGGAATCTATTTCCAAAAGTACTCGTGGCCTCAAAGAGAAGATACTTGCTCATAATGCTTCAGTGAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCTGGCATTGCTGGTGTTGCACGAATGATTGAACGCCTTGATCTTGCCTCAAAACGGACCACTGCTTCTCCTCCCATGCCCAGTTTTAGTGGGGGAACTTCTGGCTCCCCCTTGAAAGGAAAGACTGTCCTAGAAAATGGTAGTGGACAGTCTCTGATCTCTCCTATTAATAGTATTGAGCAGTCTCTTGGTGAAGAGAGCGGGGTTGTCATTCATGATGTTAGTTCAGTTGCAGCCTCACAGGTTTCCAGCACGGTTGTTAGTCAAGTAGAAACTCCTCATCCAGGTTTTCAGAGTGGACATGATGCAGTGAAGACTTAG	1251	0.446	MDNLTSSPSSSPPLPPPPTLSDIVSTSAPSSSTAFDDGSEDSCSICLEPFSTDDPATITNCKHEYHLHCILEWSQRSKECPICWQSLALKDPANQELLAAVEAEKQLRSRSSYSSAFPYSRIPLEQLNAEHDDSCSDDSDFDEQIMQHLVAAASRVHYIRRRERQRSSGAGPSEIPVVDSSVHVSGTQPVLKTSPSGGSSPISGITIAANTRPSPSSLTTVDAIARNSTPETDVPFKARVLYSEPPSESVRRLNTSEMFSFPESIKSKFSAASTRYKESISKSTRGLKEKILAHNASVKELSKGVQREMNAGIAGVARMIERLDLASKRTTASPPMPSFSGGTSGSPLKGKTVLENGSGQSLISPINSIEQSLGEESGVVIHDVSSVAASQVSSTVVSQVETPHPGFQSGHDAVKT	416

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere03g2046	416	MobiDBLite	consensus disorder prediction	1	37	-	-
	Dere03g2046	416	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	27	100	IPR013083	-
	Dere03g2046	416	MobiDBLite	consensus disorder prediction	331	350	-	-
	Dere03g2046	416	FunFam	E3 ubiquitin-protein ligase RHF1A	28	95	-	-
	Dere03g2046	416	ProSiteProfiles	Zinc finger RING-type profile.	43	83	IPR001841	-
	Dere03g2046	416	Pfam	Ring finger domain	41	83	IPR001841	-
	Dere03g2046	416	SMART	ring_2	43	83	IPR001841	-
	Dere03g2046	416	MobiDBLite	consensus disorder prediction	180	218	-	-
	Dere03g2046	416	MobiDBLite	consensus disorder prediction	162	218	-	-
	Dere03g2046	416	PANTHER	ZINC FINGER, RING/FYVE/PHD-TYPE	4	92	-	-
	Dere03g2046	416	SUPERFAMILY	RING/U-box	36	90	-	-
	Dere03g2046	416	MobiDBLite	consensus disorder prediction	23	37	-	-
	Dere03g2046	416	MobiDBLite	consensus disorder prediction	329	350	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere03g2046	Dere-ChrDere03	32563035	32566258	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere03g2046	37	94	C3H Transcription Factor Family	AT4G00335	44.828	1.20e-13	67.4