Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2029 ATGTCTCACATAACTGTCGAGAGGAACCGAAGAAGACAGATGAATGAGCATCTCAAAGTTTTAAGGTCACTGACCCCATGTTTCTATATCAAAAGGGGAGACCAAGCATCCATTATTGGGGGTGTAATAGAATTCATCAAGGAGTTAAACCAAGTTGTTGAAGCTTTGGAGTCCAAGAAAAGAAGGAAGAGTCTAAGCCCTAGCCCTCGTGGCCCTAGTCCAATAACACTTCATCAATCTGCAGATAGCCCCCTCGGAATCCGATCTGCTGATTCATTCAAGGAAGTAGGAGCAGTTAGCTGCAACTCTTCAGTTGCAGACGTAGAAGTGAAAATCTCAGGGTCCAACGTCGTATTGAAAGTGATTTCTCACAGGATTGCGGGTCAAGTTGCCAAGATTATTGGCGTTTTGGAAAGGCTTTCTTTTCAAGTTCTTCATCTCAACATCAGTAGCATGGAGGATACAGTTCTCTACCACTTTCTTGTTAAGATAGGGCTGGAATGTCAACTAAGTCTGGAGGAATTAGCAATGGAAGTGCAACGAAGCTTCAGCTCAGATGCTGTTATCACTGCGGAGATATAG 582 0.4364 MSHITVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELNQVVEALESKKRRKSLSPSPRGPSPITLHQSADSPLGIRSADSFKEVGAVSCNSSVADVEVKISGSNVVLKVISHRIAGQVAKIIGVLERLSFQVLHLNISSMEDTVLYHFLVKIGLECQLSLEELAMEVQRSFSSDAVITAEI 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2029 193 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Dere03g2029 193 MobiDBLite consensus disorder prediction 60 83 - -
Dere03g2029 193 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Dere03g2029 193 SMART finulus 4 55 IPR011598 GO:0046983
Dere03g2029 193 PANTHER TRANSCRIPTION FACTOR FAMA 1 183 IPR044283 GO:0003700|GO:0010052
Dere03g2029 193 MobiDBLite consensus disorder prediction 69 83 - -
Dere03g2029 193 Gene3D - 1 64 IPR036638 GO:0046983
Dere03g2029 193 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 68 IPR036638 GO:0046983
Dere03g2029 193 Coils Coil 46 66 - -
Dere03g2029 193 FunFam Transcription factor MUTE 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2029 Dere-ChrDere03 32414842 32416632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2029 1 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 67.805 1.43e-88 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere03g2029 HLH 1.7e-07 No_clan