Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2027 ATGGGAAATTTTTGGAGTGGCAGAAGAAGAAACAATTATTTTCACTACCCACCTCCGCCGCCTCATCCTCATCCCCATCATTTGCCATCTCCTTACTATTATTCTGCAGAATCCCATCCTCCTCCCCCACCCCCTCCGCCGCAAGGCTATTTTATCACCAATACTTACGTCACTCCCCCTCCTCTGCCCCCACCGCCGCCGCCGGCGTCTCATCCTCAAACGAATTCCTTCTGTTACTCAAATGGGTACAGCAATTGCCCCAACTATGGCAACTCTATGACGTCTCGGTATCATTATCAACCTTTTCATGTAAATCAGGGTAGTAGTGGGTGGCCTGCAATTCGTCCTCCAGTTGCTCCTGCTAATCCCCCGCCGCCCTATGTTGACCATCAAACCGCTAAGAAGGTTAAGAATGACGTCAATGTGCATAAAGATACTCTGCGGCTAGAGTTCGATCAGCTCAACCCTGACCAGCACTTGGTTTCGTTTGTTTTCGATGCGTTATATGATGGGAGCATTACTATATTCTACTTTGCCAAGGAAGTAGAAACATGTAAGTTTATCCCACTATTTCCTGAAGTTGAGCCAGTCAGAGTACCCTTTCAGAAAGGAGCTGGGCAAAATTTTTGTCAGCCTTCAGGAACTGGTATTGACTTAGGCTTCTTTGAGTTGGATGATCTCTCAAAACCCTCACAGGGAGAAGATGTCTTTCCCCTTGTGATATGTGCTGAAACATATTCGAGAACTCCTTCAGAAGATAAAAGTCTTGGTGATTCCATGCCAGATGTATCCCCTAACATGCAGATAACTCAAGCTGTTATAGAGAAAAGTAATGGTAGTGGTTCTTTCCAGGTAAAAGTAGTTAGGCAGATTTTGTGGATTGATGGGGCTCGTTATGAATTGAGAGAGTTATATGGAATTGGAAGCTCAGCAACGGCAGATTTCAATGACAATGATCCTGGGAAGGAGGAATGTGTAATATGCATGACCGAACCAAAGGACACTGCTGTCTTACCTTGTCGACATATGTGTATGTGCAGTGAGTGTGCCAAAGCTTTGAGGCTTCAATCAAATAAATGCCCCATATGTCGACAATCCATTGAGGAACTTATAGAGATCAAGATAACTAATGGCAACCAGTGA 1143 0.4488 MGNFWSGRRRNNYFHYPPPPPHPHPHHLPSPYYYSAESHPPPPPPPPQGYFITNTYVTPPPLPPPPPPASHPQTNSFCYSNGYSNCPNYGNSMTSRYHYQPFHVNQGSSGWPAIRPPVAPANPPPPYVDHQTAKKVKNDVNVHKDTLRLEFDQLNPDQHLVSFVFDALYDGSITIFYFAKEVETCKFIPLFPEVEPVRVPFQKGAGQNFCQPSGTGIDLGFFELDDLSKPSQGEDVFPLVICAETYSRTPSEDKSLGDSMPDVSPNMQITQAVIEKSNGSGSFQVKVVRQILWIDGARYELRELYGIGSSATADFNDNDPGKEECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIEELIEIKITNGNQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2027 380 MobiDBLite consensus disorder prediction 35 50 - -
Dere03g2027 380 MobiDBLite consensus disorder prediction 28 71 - -
Dere03g2027 380 MobiDBLite consensus disorder prediction 57 71 - -
Dere03g2027 380 SUPERFAMILY RING/U-box 318 370 - -
Dere03g2027 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 374 IPR013083 -
Dere03g2027 380 Pfam Zinc finger, C3HC4 type (RING finger) 322 369 - -
Dere03g2027 380 ProSiteProfiles Zinc finger RING-type profile. 325 364 IPR001841 -
Dere03g2027 380 SMART ring_2 325 363 IPR001841 -
Dere03g2027 380 FunFam probable E3 ubiquitin-protein ligase LOG2 308 374 - -
Dere03g2027 380 PANTHER MAHOGUNIN 1 374 IPR045194 GO:0061630
Dere03g2027 380 CDD mRING-HC-C3HC5_MGRN1-like 324 364 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2027 Dere-ChrDere03 32377255 32382818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2027 97 380 C3H Transcription Factor Family AT3G06140 58.586 5.25e-105 311