Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2014 ATGGTGGCCAGCCGACAAAACGCTTTCAACTCAGCTATTGCTTGCAGCTTCCATACCAGCGCCGTCCCTCGGAGGCTCCTTTGTTCTAACTTGCCTATTGGTGTTATACTCTTAATGTTGCACGTGACAATGGTGAGGGTTAGTGTCTTGAATGATGCTCTCAAGAGTATGTACAATGCCGAGAAACGGGGGAAGCGTCAGGTCATGATTAGGCCATCCTCAAAAGTCATTATCAAATTCCTTTTGGTTATGCAGAAGCATGGATACATTGGAGAGTTTGAATATGTTGATGACCACAGGGCTGGCAAAATTGTGGTTGAATTGAATGGGAGATTGAATAAATGTGGGGTTATTAGTCCCCGCTTTGATGTGGGTGTCAAAGAGATTGAACCTTGGACTGCAAGGCTACTTCCCTCAAGACAGTTTGGCTACATTGTCTTGACTACCTCTGCTGGTATCATGGATCATGAAGAGGCAAGGAGAAAGAATGTTGGTGGCAAAGTTTTGGGTTTCTTTTACTAA 522 0.4444 MVASRQNAFNSAIACSFHTSAVPRRLLCSNLPIGVILLMLHVTMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2014 173 Gene3D - 44 112 - -
Dere03g2014 173 FunFam 40S ribosomal protein S15a 44 112 - -
Dere03g2014 173 Hamap 30S ribosomal protein S8 [rpsH]. 45 173 IPR000630 GO:0003735|GO:0005840|GO:0006412
Dere03g2014 173 SUPERFAMILY Ribosomal protein S8 47 173 IPR035987 GO:0003735|GO:0005840|GO:0006412
Dere03g2014 173 Gene3D - 113 173 - -
Dere03g2014 173 FunFam 40S ribosomal protein S15a 113 173 - -
Dere03g2014 173 PANTHER 40S RIBOSOMAL PROTEIN S15A 44 172 IPR000630 GO:0003735|GO:0005840|GO:0006412
Dere03g2014 173 Pfam Ribosomal protein S8 50 173 IPR000630 GO:0003735|GO:0005840|GO:0006412
Dere03g2014 173 ProSitePatterns Ribosomal protein S8 signature. 143 160 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2014 Dere-ChrDere03 32170801 32173107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2014 44 173 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 96.923 1.28e-92 263