Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2002 ATGATTGTAGCAGAAAACCCTGTAGTTACAGAACTGGCGATGAATAATGCCAGTGGCGATCAGGAAAGAGAACTTGCCCATGAACCATACATTGGGTTAGAATTTGAAACAGCAGATGATGCACTTCAGTTCTACACGTCATATGCAAAGCAAGTTGGATTTAAAGTTCGGATTGGTCAGTTGTATCGATCAAGAACTGATGGCTCAGTTTCTTCCAGAAGATTTGTGTGCTCAAAGGAGGGATATCAGCTCAGTTCAAGAACAGGTTGTCCAGCATTTATAAGGGTACAAAAGCGTGATTCAGGGAAGTGGGTTGTTGATCACTTCCTGAAGGGCCACAATCATGAACTTGAACATGATGGTGAAGGCGAAAGTTGGCCTCCTAATTTGCAGCAGAAGAATGCTACAGCTGTAAAATCTTTTACTGATGTGTCCAATAGGCAAAGGAAAAAGGTGCTTGAAGAAGCTAAGGATGAGCATTCTTGTCCCTTTGGCATTATTAATTTCAAGCGTCTGAGGAAAGGAGATGAAGGGCAGTCCGGGGCTGAACCGTGTGTTGGCCAAGAATTCAGTTCATCTAATGAAGCTTACCAATTTTATAATGCATATGCAGCCTATGTGGGTTTCAGAATCCGTATTGGTCAATTATTTCGTTCTAAGAATGATGGGTTGATCACATCTCGAAGATTTGTGTGCTCAAAAGAGGGATTCCAGCACCCTTCAAGAGTTGGTTGTGGGGCTTATGTAAGAATTAAGCGACAACCATCTGGAAAGTGGGTAGTAGACCGTCTTCATAAAGATCATAATCACAATCTTGAACCTGGAAAAGAAAGTAGGCCAAAGAGTCTACCTGCTTTAAATATTTTGGCAGATGAGGTTGATGCTGGATTGGTAAATGGTGACTTATTTAGGATAGATAACTACCCTGTTCCTAGAGGAGAATCATGGAGTAGCCCTCAGGAACTCAGGAATTTGATGCTATGGAGTCTAAGAGAAACTGCATGTAAATACATAGAAGCTGGGGCATCATCGCTGGACAAGTACAAGCTTGCCTATGAGATTTTACAGGAGGGTGGGAGGAAGCTATGTTGGCATAGGTGA 1101 0.4233 MIVAENPVVTELAMNNASGDQERELAHEPYIGLEFETADDALQFYTSYAKQVGFKVRIGQLYRSRTDGSVSSRRFVCSKEGYQLSSRTGCPAFIRVQKRDSGKWVVDHFLKGHNHELEHDGEGESWPPNLQQKNATAVKSFTDVSNRQRKKVLEEAKDEHSCPFGIINFKRLRKGDEGQSGAEPCVGQEFSSSNEAYQFYNAYAAYVGFRIRIGQLFRSKNDGLITSRRFVCSKEGFQHPSRVGCGAYVRIKRQPSGKWVVDRLHKDHNHNLEPGKESRPKSLPALNILADEVDAGLVNGDLFRIDNYPVPRGESWSSPQELRNLMLWSLRETACKYIEAGASSLDKYKLAYEILQEGGRKLCWHR 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2002 366 Pfam FAR1 DNA-binding domain 43 118 IPR004330 -
Dere03g2002 366 Pfam FAR1 DNA-binding domain 198 273 IPR004330 -
Dere03g2002 366 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 11 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2002 Dere-ChrDere03 32085735 32088020 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Dere03g2002 FAR1 1.8e-19 CL0274