Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1981 ATGGACAATGATCGCCGATCCAAAGCTTCCTCAAGCGGTGAATTCCCCGAATTAGAAAAAGATGACTCGAAAGAAAAGAAGACTAATTTAAGAAGCAGAAGAGCCCGGACTGCGTTTTCTGATTCCTTTCCTAACTTTGACCTCAATGCTTTATACATCAAGGAGGAGGGCACACCCGAGTGCTCTACTAGTAGAGACGTGCCTGGGGACTGTCCAAGAAGGTTAGAATCTGAAGCCCATTCCTCCAACGCCAGCACTTCTGATTCAGAGTGTCAACCGGATCATGGAAACAATGCTCATTGGCGTGGTTTGCTTCGTTTTGTGAAAAAAGGAGGATCCCATCTTCGCTTGAATCCTCCACCTAAAAATATTCCCAAACTCACCAGAAGAACAGTTAGAAAAATCAAGGAGGACCTCCTCCCTGCTTTAAATTCTCCAGCTCCAAAATCACCTCTTACACCAGAAATATGCTGCTTAAAATCTTCATGGATAAATTTCTCTTTTTCACAGCTCCAAGCTGCCACTAACAACTTCAGCCATGAGCTTTTGATTGGGAAGGGAGGTTATGCTGAAGTTTACAAAGGAAAAATGGAAGATGGGAAGTTTGTTGCAATCAAACGGCTGATAAAAGGAAGCCAAGAAGAAATGGCTGCTGATTTCTTGTCTGAACTTGGTATTATAGTCCATGTGGACCATCCCAATATTGCCAGATTGATTGGTTATGGCGTCGAAGGGGGAATGTTTCTTGTTCTTCAGTTGTCTCCACATGGCAGCCTAGCAGGCATACTTTATGGACCTCGAGAGAAACTGGATTGGAGCATCAGATTTAAGGTTGCTGTAGGAACTGCTGAGGGCCTTCAATATCTGCATGAGGGATGCCAAAGAAGGATCATTCACAGAGATATCAAGGCTGCTAATATTTTGCTCTCAGAGGATTTTGAGCCTCAGGTGTCTGATTTTGGGCTTGCAAAGTGGTTACCTGACCAATGGACTCACCATACTGTTGACAAAATTGAAGGCACATTCGGCTACCTTCCTCCTGAATACTTCATGCATGGTATAGTAGATGAAAAGACAGATGTCTTTGCTTATGGAGTGCTATTATTGGAGCTCATTACTGGGCAACAAGCTTTGGATAGCTCTCAGAAAAGTCTGGTGATGTGGGCAAAACCTTTGCTATCTATAGATAAGATAGGAGAGCTTGTTGATCCGTGTCTGACTGATGCTTATGACAAAGAACAGATGAAAATTGTAGTCTTGACGGCTGCTTTGTGCATAGATCAGTGTTCAGTTCAGCGACCACAAATGAGCCAGGTAGTAAAGACTCTAAAAGGTGATCAAGAGAGCTTGAAGTTGGTAATGGAACGCCAGAAGTCAAAACTTCGAAGGACTTATTCTGAAGAACTGTTGGATGCAGAAGAGTACAATTCAACCAAGTACTTGAATGACCTGAATTGCAACTCTTTTAAGGAAGAAAACATTCATAACTAG 1491 0.4279 MDNDRRSKASSSGEFPELEKDDSKEKKTNLRSRRARTAFSDSFPNFDLNALYIKEEGTPECSTSRDVPGDCPRRLESEAHSSNASTSDSECQPDHGNNAHWRGLLRFVKKGGSHLRLNPPPKNIPKLTRRTVRKIKEDLLPALNSPAPKSPLTPEICCLKSSWINFSFSQLQAATNNFSHELLIGKGGYAEVYKGKMEDGKFVAIKRLIKGSQEEMAADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLAGILYGPREKLDWSIRFKVAVGTAEGLQYLHEGCQRRIIHRDIKAANILLSEDFEPQVSDFGLAKWLPDQWTHHTVDKIEGTFGYLPPEYFMHGIVDEKTDVFAYGVLLLELITGQQALDSSQKSLVMWAKPLLSIDKIGELVDPCLTDAYDKEQMKIVVLTAALCIDQCSVQRPQMSQVVKTLKGDQESLKLVMERQKSKLRRTYSEELLDAEEYNSTKYLNDLNCNSFKEENIHN 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1981 496 ProSitePatterns Protein kinases ATP-binding region signature. 184 206 IPR017441 GO:0005524
Dere03g1981 496 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 255 457 - -
Dere03g1981 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
Dere03g1981 496 Gene3D Phosphorylase Kinase; domain 1 147 252 - -
Dere03g1981 496 Gene3D Transferase(Phosphotransferase) domain 1 255 469 - -
Dere03g1981 496 ProSiteProfiles Protein kinase domain profile. 178 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1981 496 MobiDBLite consensus disorder prediction 1 34 - -
Dere03g1981 496 MobiDBLite consensus disorder prediction 1 39 - -
Dere03g1981 496 Pfam Protein kinase domain 182 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1981 496 SMART serkin_6 178 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1981 496 MobiDBLite consensus disorder prediction 78 94 - -
Dere03g1981 496 SUPERFAMILY Protein kinase-like (PK-like) 166 469 IPR011009 -
Dere03g1981 496 MobiDBLite consensus disorder prediction 58 95 - -
Dere03g1981 496 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 154 253 - -
Dere03g1981 496 PANTHER OS08G0249100 PROTEIN 53 477 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1981 Dere-ChrDere03 31894007 31897712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1981 162 477 Trihelix Transcription Factor Family AT5G38560 40.708 1.92e-68 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Dere03g1981 Pkinase 4.1e-39 CL0016