Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1976 ATGGAGACCGAAGCTCCTTCCCCTTCCATATCACCTAAATCACACTCATCGCCACGGCCGCTGCAGCAACCGTCATCGTCGCCATCGGTTCTCGGTCACCGACCGGGGGTTTCTGAGATGGAGGTGCAACAGCGTTTCTCGGAAGACTCTTCAGCTGTTTGGGACCTGGATTGCCTGTTGGATTTCAGCATAGAGGATCATTTAGCTATCTCCTTAGATGAGTATCACCCTAATCCTGAGGTACCTGAACCCCTGGGGCTTCCTCCGCAAGAGATTCCCGGTGCCGACAAGGTCCGCAAGCGAGACCCCAGGTTGACTTGTTCCAATTTCCTTGCGGGTCGGGTCCCATGTGCGTGTCCGGAAATGGATGCGAAGCTTGAGGAAGAGGGTTTGCCTGGTAAGAAGCGGGCTCGGACCGTGCGGGCATCGGGTGGGATTGCACGGTGTCAGGTACCTGGGTGCGAGGCAGATATTACTGAGCTCAAGGGGTATCACCGAAGGCATAGGGTTTGTTTGCGTTGCGCAAATGCTAGCACAGTTATGCTTGATGGGGAGGCCAAGAGATACTGCCAACAGTGTGGAAAGTTTCACTTGTTATCAGATTTCGATGAAGGTAAACGAAGCTGTAGAAGAAAATTAGCGCGCCACAACAACCGAAGGCGTAGAAAGCCTACAGATTCCAGAGCTGCAGCAGATAATGAATTTCAACCTGTTAACCAGACTGAGGATGAGTCAGGAAAAGATAGTTTTCGTTTAAGCAGTGAGACAAATGAAATAGAAACTGTACTGGAGCATGAAGATGGACGAGTTACTACCCTATATTCTGCTCCTGATACCCTGAATACTAAAAATGATAGTGTTGTATCTTTTGTTGCTTCTGGTGAAACACAAGTGAATGGTGGAAAAGATAATTCTAATTCTAATATTTCTAATTCACCATCATATTGTGACAACAAGAGTGCTTACTCATCTATGTGCCCAACAGGTCGCATATCTTTTAAGCTTTATGATTGGAATCCTGCAGAATTTCCCAGAAGGCTACGGCATCAAATATTCCAGTGGTTGGCTAGTATGCCTGTTGAGCTGGAGGGTTATATCCGTCCTGGGTGTACAATCTTGACAAGTTTTATTGCAATGCCAAAATTTATGTGGACAAGTTTACTTGAAGACACTCTGTATTATGTAAATGATCTTGTTGCTCCTGGAAAGATGCTATCTGGAAGAGGAACCATACTTGTCCATCTGAATGACATGATCTTCCATGTTACGAAAGATGAAACTTTTGTGACAGAAGTCCAGATAAAGGTGCAGGCACCAAGGCTTCACTATGTTCATCCTACATACTTTGAGGCCGGAAAACCTATGGAATTTGTTGCTTGTGGAAGTAACTTGCTGCAACCCAAGTTTCGGCTTCTTGTATCTTTTTCTGGAAATTATTTAAAGTATGATTACTGTGTTGCATCTCCTCATAACTGGGCAGGGGACGGCATTTCTTGTGCTTTTGATGGTCAACTGTACAAGATATATGTCCCTCATACAGAGCCAAATCTCTTTGGGCCTGCATTTATTGAGGTGGAGAACGAGTCTGGTTTATCAAACTTCATTCCTGTACTCATTGGGGACAAGGAAATCTGCTCTGAAATGGAGACATTGCTACAAAAACTAGATGTATCTCTTCTTTCTAAACAAACCCAGCCTGCATCTTCTGGTTCTATCTGCAGCTTCTGTGAAGCTTTTGCACTGAGACATACATCATACTCAGACTTACTGTTAGATATAGCATGGCTGCTTAAGGATCCTACTTTGGACTATTTTCACAGGGCTATGACGGCTTCACAAATTCAAAGATTTTGTTATTTGATTGACTTTTTGATGTGCAATGAATTAACTGTCATTTTGGGGAAAATATTACAGAATTTGATTATTTTGACGGAAAACATGGAAACCAACAATGTGATTAATAGGATGAGCGAGGTTGACATAACATTACTAATGAATCACACAGATCAAGCTAGAGATTTCCTTTATCAAAAACATCAGAGAGGTGGTGATTTAGTTGTGCACTCTGTTTTCTCTGAAATGGAAGGACATGAAGTTGCTCAAAGCTACAATCAAGATAGCATACCATCAGTTGTTACTATCAATAGTCAGGGTGCCGAGTCAAGAGTACATTCCAAGTTGGGAGTACTGAGAAGTGCAACTTCCAGTGGGAAAAGTGAAAGGATACCTCTTTTGAGGAGGGAGATTTTAATGAATATGGAAGAATTGCCTAGAAGATCTGGTTATCGACATCTTGTGAGGGGATTTTTGGGATCTCGATCGGCTATTCTTATGATTGCTTCGGTGGCTGTTTGTGTTGGGGTTTGTGCAGCCCTCCTTCATCCTGGGAGGGTTGGTGAGTTTGCAGTATCCATTAGAAGGTGCTTGTTTAGTTCTTCATAG 2442 0.4349 METEAPSPSISPKSHSSPRPLQQPSSSPSVLGHRPGVSEMEVQQRFSEDSSAVWDLDCLLDFSIEDHLAISLDEYHPNPEVPEPLGLPPQEIPGADKVRKRDPRLTCSNFLAGRVPCACPEMDAKLEEEGLPGKKRARTVRASGGIARCQVPGCEADITELKGYHRRHRVCLRCANASTVMLDGEAKRYCQQCGKFHLLSDFDEGKRSCRRKLARHNNRRRRKPTDSRAAADNEFQPVNQTEDESGKDSFRLSSETNEIETVLEHEDGRVTTLYSAPDTLNTKNDSVVSFVASGETQVNGGKDNSNSNISNSPSYCDNKSAYSSMCPTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTSFIAMPKFMWTSLLEDTLYYVNDLVAPGKMLSGRGTILVHLNDMIFHVTKDETFVTEVQIKVQAPRLHYVHPTYFEAGKPMEFVACGSNLLQPKFRLLVSFSGNYLKYDYCVASPHNWAGDGISCAFDGQLYKIYVPHTEPNLFGPAFIEVENESGLSNFIPVLIGDKEICSEMETLLQKLDVSLLSKQTQPASSGSICSFCEAFALRHTSYSDLLLDIAWLLKDPTLDYFHRAMTASQIQRFCYLIDFLMCNELTVILGKILQNLIILTENMETNNVINRMSEVDITLLMNHTDQARDFLYQKHQRGGDLVVHSVFSEMEGHEVAQSYNQDSIPSVVTINSQGAESRVHSKLGVLRSATSSGKSERIPLLRREILMNMEELPRRSGYRHLVRGFLGSRSAILMIASVAVCVGVCAALLHPGRVGEFAVSIRRCLFSSS 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1976 813 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 602 IPR044817 GO:0003677
Dere03g1976 813 Pfam SBP domain 149 223 IPR004333 GO:0003677
Dere03g1976 813 SUPERFAMILY SBT domain 147 227 IPR036893 GO:0003677|GO:0005634
Dere03g1976 813 Gene3D - 145 210 IPR036893 GO:0003677|GO:0005634
Dere03g1976 813 ProSiteProfiles Zinc finger SBP-type profile. 146 223 IPR004333 GO:0003677
Dere03g1976 813 MobiDBLite consensus disorder prediction 1 32 - -
Dere03g1976 813 MobiDBLite consensus disorder prediction 215 252 - -
Dere03g1976 813 MobiDBLite consensus disorder prediction 1 44 - -
Dere03g1976 813 Coils Coil 813 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1976 Dere-ChrDere03 31832886 31841678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1976 50 812 SBP-box Gene Family AT5G18830 47.589 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere03g1976 SBP 7.5e-28 No_clan