Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1975 ATGGGGAGATACCGAAGCCGAAGCAGAAGTTACAGTCCTCGCCGGAGAAGCAGAACCCCACCACGTGGGCGCAAGCGGTACGATGATGACCCTCGTGATCGCTACCGTGACAGCAGGTCTTACAGAGACCGCCGCTCTCCTGCTCCTTCTGGCTTGCTTGTCCGTAATCTTCCCCTTGATGCTAGGCCTGAAGATCTTAGGGGCCCATTTGAGCGCTATGGTCCTGTGAAAGATGTATATCTTCCTAAGAATTACTACACTGGTGAGCCTCGGGGTTTTGGATTTGTAAAATTCCGATATGCTGAAGATGCAGCTGAAGCAAAGCAACAACTTAATCATACTGTCATTGGTGGGCGTGAAATAAGAATTGTCTATGCTGAGGAAAATAGGAAAACTCCTCAAGAAATGCGTATGAATTCTCGCATAAGTGGTCGTTATGGAGGAGCTGGTAGAAGGAGAACTCCCACAAGATCCCCGAGGCGCCGACATCGTTCTTACTCAAGGTCTTTATCACCAGCCAGGGATGACTCAAGGGATCGCAGGGGCAAGGATGATTATTATTCTCCTGAGCTATCAAGATCTTATTCTAGGTCTCCTTCACCTCGTGTTGGTAAGGATTATAGGAGGTCCCCAAGTCCAAGGGAGAATGGTCGGAGTCCTGATGATAGGATGGATCATACACATAGCAGATCAGAGAGTCCTAGGGGAAATGGTCACAGTCCCTCTCGTTCACGGTCGTACAGTCCTCGCTGA 753 0.494 MGRYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRDSRSYRDRRSPAPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQQLNHTVIGGREIRIVYAEENRKTPQEMRMNSRISGRYGGAGRRRTPTRSPRRRHRSYSRSLSPARDDSRDRRGKDDYYSPELSRSYSRSPSPRVGKDYRRSPSPRENGRSPDDRMDHTHSRSESPRGNGHSPSRSRSYSPR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1975 250 MobiDBLite consensus disorder prediction 234 250 - -
Dere03g1975 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 122 IPR000504 GO:0003723
Dere03g1975 250 MobiDBLite consensus disorder prediction 22 44 - -
Dere03g1975 250 Gene3D - 3 140 IPR012677 -
Dere03g1975 250 MobiDBLite consensus disorder prediction 202 233 - -
Dere03g1975 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Dere03g1975 250 SMART rrm2_1 51 124 IPR003954 GO:0003676
Dere03g1975 250 SMART rrm1_1 51 124 IPR000504 GO:0003723
Dere03g1975 250 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 46 240 - -
Dere03g1975 250 MobiDBLite consensus disorder prediction 1 21 - -
Dere03g1975 250 MobiDBLite consensus disorder prediction 131 250 - -
Dere03g1975 250 SUPERFAMILY RNA-binding domain, RBD 47 153 IPR035979 GO:0003676
Dere03g1975 250 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 142 - -
Dere03g1975 250 MobiDBLite consensus disorder prediction 168 190 - -
Dere03g1975 250 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1975 Dere-ChrDere03 31811820 31816305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1975 42 137 Eukaryotic Initiation Factors Gene Family AT1G22760 28.571 1.76e-07 49.7