Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1969 ATGCAAGCAGCTCAAGCTGCTTCGGAAGAAGCTTCTGATAATTCAGAGAAGACTGAACTCCAGTTAAACAAAGAAGTTTCAGATAATGGACCAAGTGGGAGGCGTCCGGATATTTCACTTCAAATCCCACCTAGACATTTAGGATTTGGAAATGCACGCGGTGGAAGGGGTCTGGACCATTCTCAAAGTTTCTCTAGAAGGATTCAATCACCAGGGGGCTTTTTGCGGGCTTTGAGCCTCAAAAGGAAAGGAAATACAGCAGATGCTGAAAGAAGCAGCCTCCTCAATTCAGATCCCAAGACAGCTCCAGACAGTCCTAATATGGCCGACATTACATCTACAATGCCATGGAAAAGATGTACTTCGCTTCCTGTTACACCTGCAACAAATCTATCCCCTTCAGTTTCTACACCTGCTTCTGCAAGGACATACAGTGAACAGCCTAAACTACATAAAGATGCTGTTCATTCCAAGGTTTCAAGGTCCCTCTCTGTACCTGGACGGAATATAGTTATCGTAAGATCTGTGTCTTTTGCAGCCCACAGTGAGCACGCACAACAAGATCAGAATGACGATCAAATAACTCCTGTGCCAGTAGAAGGGACTGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATCTGTTATGATGTCTGTGATGAAAGGAACACCCTCAAATTGGAATGCAGTTGTAAAGGTGACCTGACACTGGTGCATGAAGAATGTGCAATTAAATGGTTTAGCACAAAAGGAAATAAGAAATGTGATGTTTGTGGCCAAGAAGTTCAGAATTTACCTGTAACATTACTTCGCTTGCCCAGCTCTGCTCAGACGGGAAGGAGACAGGTGCAGGGTCAGCAGAACTTGCATCCCGAGACAATAAGTGCCTGGCAAGACTTTGTGGTGCTTGTTCTAATAAGCACAATATGCTATTTTTTCTTCCTCGAGCAGCTACTGCTTCCTGACATGAAGACTCAAGCAATCATCATTGCAGCACCATTTGCCTTTACCTTGGGTCTCCTGGCGTCTATTTTTGCAGTCATCCTTGCAATAAAAGAGTATATATGGACATATGCTGCTCTCGAGTTCGCTCTTGTGGCTATAACTGTACACCTGTTCTATAGTATGTTGCATTTGAAGGCCATTTATGCAATACTACTTTCATCAGTTTTGGGTTTTGGTGTAGCTATGAGCATCAACTATGGCTACATCCAGTATGTTTCTTGGCGCCTTCAAGTCTCCCAGGATGCTAACCCAGTATGA 1266 0.44 MQAAQAASEEASDNSEKTELQLNKEVSDNGPSGRRPDISLQIPPRHLGFGNARGGRGLDHSQSFSRRIQSPGGFLRALSLKRKGNTADAERSSLLNSDPKTAPDSPNMADITSTMPWKRCTSLPVTPATNLSPSVSTPASARTYSEQPKLHKDAVHSKVSRSLSVPGRNIVIVRSVSFAAHSEHAQQDQNDDQITPVPVEGTDEEIPEEEAVCRICYDVCDERNTLKLECSCKGDLTLVHEECAIKWFSTKGNKKCDVCGQEVQNLPVTLLRLPSSAQTGRRQVQGQQNLHPETISAWQDFVVLVLISTICYFFFLEQLLLPDMKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVAITVHLFYSMLHLKAIYAILLSSVLGFGVAMSINYGYIQYVSWRLQVSQDANPV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1969 421 MobiDBLite consensus disorder prediction 124 144 - -
Dere03g1969 421 Coils Coil 1 21 - -
Dere03g1969 421 CDD RING_CH-C4HC3_MARCH 213 260 - -
Dere03g1969 421 PANTHER OS02G0165000 PROTEIN 55 417 - -
Dere03g1969 421 MobiDBLite consensus disorder prediction 1 66 - -
Dere03g1969 421 SUPERFAMILY RING/U-box 209 263 - -
Dere03g1969 421 Pfam RING-variant domain 213 259 IPR011016 GO:0008270
Dere03g1969 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 267 IPR013083 -
Dere03g1969 421 MobiDBLite consensus disorder prediction 89 109 - -
Dere03g1969 421 MobiDBLite consensus disorder prediction 85 109 - -
Dere03g1969 421 SMART ringv_2 212 260 IPR011016 GO:0008270
Dere03g1969 421 ProSiteProfiles Zinc finger RING-CH-type profile. 205 266 IPR011016 GO:0008270
Dere03g1969 421 MobiDBLite consensus disorder prediction 124 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1969 Dere-ChrDere03 31776130 31781354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1969 226 321 C3H Transcription Factor Family AT5G59000 33.333 3.07e-11 61.2