Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1962 ATGAACTGGTTTTGGGCCTGCTTTCCGATATGGAAATGTGAAATTCACAATTCACGCGCAAGGGCTCGAGCAAACGCACGCACGTACAGGATTAAGGACCGCGTTTGGGGGTCTCACTCTGCAAAGGAAGGAAAAAGGGTTTATGCATATGTTAATAGGTTGGTGGATAAGTATATGATATCGGTTTTGAAAGTTTTAAATGATATGGCGTCCTCACATAATGTGGAGTTGGAGGCAGCAAAGTTTCTGCACAAACTCATTCAAGATTCTAAGGATGAGCCAGCCAAGTTGGCTACTAAACTCTATGTGATACTGCAACACATGAAATCAAGTGGGAAAGAACATTCAATGCCATACCAAGTGATATCAAGGGCTATGGAGACAGTTATCAATCAGCATGGTCTTGATATTGAAGCATTAAAGTCTTCACGCCTTCCTTTAACTGGTGGAGCTCAAATAGGGCCTTCACAGGCAGTAGGTGTTGCAAAGGATTCCAGAGTGGGCTTGGCTGAAAATGAGATGGCCAAAATGGAACCATTTGCTTCTAATCGGCCACCAGTTGCCCCAAATAGTGGAGCACCTGACTATTATCAGGGATCTATAGCTCAGAGGAGCAGTCAGTCTTTTGATCAAGAAAGTCCATCTAGTTTGGACTCAAGGTCTGCTAACTCACAGTCACAAGACAGACGTGATACTGCTAACTGGGATAAATTGGTGAGTCAAAAGGAAGGTAAGAAAGCTACAACAAAGAGAAAGAGGGGCGATGCATCTTCGCCCATGGAACAGCATGCTGATGTTCCTACTCAACTTGATTCCCGTAATACTGTTGTTAATGCAAGGAAGGGAAAAATGACAAAAGCTGAACCATCAGATGGCCTTACAGTCAAAAGTGGTGCTTATGGCAAGGCTCATGGTGGGATGACAGTTGCCTCTAGTGCATATCCGCTGGCAGAACCGGTTTTCTCAAGTCCAGTGCAGTATGGTGGTGCACTTGAGCAGGATGTGGGAAGCGCAGCTACTTTAGCTGATGGACATAAAGTTGCACAGATTGGCAGGCAAAACAGTGCCTCTGAAATGGCAATGCTAAGACAAGGTGGTCCTCCCAGAGATACTGGAAAATCCTCTGTTTCTTCTATACCTGCATCATCTTCCACGCCATTCAAAGAACAACAGTTAAAACAGCTTCGAGCTCAGTGCCTAGTTTTTCTAGCATTCAGAAATGGTTTGCCACCAAAGAAATTACATCTTGAAATTGCTCTGGGAACCACCTTTTCCAGAGAAGATGGTACCCGCAAAGAGCTGATTGACCACAAAGGAAAATCACTGTCTTCAAATGAACTCAGTAATGTACCTGGAATGATGATGCCTTTTGGAGGACTGAACAATATGAGACAAACTGATAAAACCCCTTCAGGGTCCTCTTCTGCTGGAAAGATTCTGGAGGCTGATTCATTGTCAAAGGGAATTGAGAGCCCTAAAATGATGGAGGACAGAAGTAACCTGCATTCTGATGTCCATGCCCTTGTTGAAGAAAGGAAGCATCTCCTAGCCTCAAAGAAAGCAGAAGTTGAAAGACAGATTCAAGAAAGAGTGGCTGCACAAGCTTGTTCAAACACAATGTTTCAGCAGCAGGATTCTGTGAGCGCCAGGGGTTCTTTAGTTGTTAATAATCATTTGGATGATGTTGAAAATGGTAACCTGCAGGTTGGAAGGTCTAACCAGCCTTCTTCTGTCATGGTTCTGAATAAGCCAGTGAATCCTGAGGTTATTAACTGGACTGGATTTGTCAATCATAATGAGGCTTTGAAAGGACCCCTACAGGTCTCTGCTGTTCAGCAGGATTTACCTATTGAAAGAAGAGAGAATATTCCTAGTCATTTTCAAAATATTGGTAATAATAGTGGTGGATCTAGGAATCTCAATTCTGTTAATCCCTTGCCTTCTTATTCCTTAAAAGAGCACTGGAAACCTGCTTCAGGAACTGACAGTGATCCTCAGGGGATGACCATGTTGAGGGATATGAATGTTATGGCAAAACATGTTTCTACAGAGCAAGATGGAAATGATAGGTTGGTATCAGCTGATTTGTCAGCGTCTCCAAAATATACTATGTCAGAGAGATGGATTATGGATCAGCAAAAGAAGAGGCTTCTTGTTGAGCAAAATTGGGTACGAAAACAGCAGAAGACAAGGCAAAGAATTGCATCATGTTATGACAAGCTCAAGGAAAATGTGAGCTCATCTGAAGATATATCTGCAAAGACAAAAAGTGTCATAGAACTGAAAAAACTTCAACTATTGGATCTCCAGCGTCGTCTCCGCAGGGAAAGACTGGATGATTCATTCAAAATCAAGAGGGAACGATGGAAGGGTTTCAACAGATATGTGAAGGAGTTCCATAAAAGAAAAGAACGCATTCATCGTGAGAAGATTGATAGAATCCAGCGGGAAAAGATTAATTTGTTGAAAGTGAATGATGTGGAGGGGTATCTACGAATGGTGCAGGATGCAAAATCTGATCGGGTTAAGCAGCTTCTTAAAGAGACTGAGAAGTATCTTCAAAAGCTTGGCTCCAAGCTTCAGGAGGCAAAGGCTGCTGCTGGACGTTTTGAGCATGATGCTGAAGAGGCAGGAAATGACAGTATTTTTGAGAAGTATGAAACAAGTCTTGAAAACGAGGATGAAAGTGATCAGGCAAAGGCAAGTTCATACTCATGGTCTTTTGAGCCCATTGATCTGTACATCTCTTCTAGGAATGTCTGTATAAAGGAGAGCATTGCTGAGCAGCCATCTTCTCTGCAGGGTGGAAAATTAAGGGAGTATCAAATGAATGGCCTGAGGTGGCTGGTTTCACTATACAACAATCATTTGAATGGAATCCTTGCTGATGAAATGGGACTGGGTAAAACTGTTCAGGTTATTGCTCTAATTTGCTACCTGATGGAGACCAAAAATGATAGAGGACCTTTTCTTGTGGTTGTTCCCTCTTCGGTTCTACCAGGATGGGAGTCAGAAATTAATTTTTGGGCTCCTGGTGTTCATAAAATTGTTTACTCTGGGCCACCAGAGGAGCGGCGGCGGTTGTTCAAGGAAAGGATTGTTCACCAGAAATTTAATGTCCTTTTGACAACGTATGAGTATCTGATGAACAAGCATGATAGACCTAAGCTGAGCAAAATACATTGGCACTATATAATAATTGATGAAGGTCACCGCATAAAGAATGCTTCTTGCAAGTTGAATGCTGACTTGAAACACTATCAGAGCTCTCATCGATTGTTGTTAACTGGAACGCCGTTGCAGAACAATCTTGAGGAACTGTGGGCACTACTTAACTTCTTGTTACCTAACATATTTAATTCATCAGAGGACTTTTCTCAATGGTTCAATAAACCATTTGAGAGTAATGGAGATAGTTCACCTGATGAAGCTTTACTTTCTGAGGAGGAGAATCTTTTGATCATTAACCGCTTGCATCAAGTTCTGAGGCCATTTGTACTTCGCAGGCTGAAACATAAGGTTGAAAATCAGCTGCCTGAAAAGATTGAGAGACTTGTAAGATGTGAGGCTTCTGCATATCAAAAACTTCTGATGAAGAGGGTGGAAGAAAATCTTGGTTCTATTGGAAGTTCAAAGGGTCGATCTGTACACAATTCTGTCATGGAGCTTCGTAATATATGCAATCATCCATATCTCAGCCAGCTTCATGCAGACGAGGTGGATAACTATATACCTAAGCATTATTTGCCACCAATTGTAAGACTTTGTGGGAAGCTTGAAATGTTGGACCGATTATTACCTAAGTTGAAGGCGACAGATCATCGGGTTCTTTTCTTTTCCACAATGACTAGGCTTCTTGATGTAATGGAGGAATACTTAACCCTAAAACAATATCGATATCTCCGATTGGATGGACATACATCAGGAAGTGATCGTGGTGCCTTAATTGATATGTTTAACCAACCTGGTTCTCCATATTTTATATTCTTGCTCAGCATCCGAGCTGGTGGTGTTGGGGTGAATCTTCAAGCTGCTGACACGGTGATTATATTTGACACTGACTGGAATCCACAGGCAATGAGATTTCTGCTATGTGCTTTTGAATTGCGTAGCTTTAATTGCTGA 4125 0.4206 MNWFWACFPIWKCEIHNSRARARANARTYRIKDRVWGSHSAKEGKRVYAYVNRLVDKYMISVLKVLNDMASSHNVELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQHGLDIEALKSSRLPLTGGAQIGPSQAVGVAKDSRVGLAENEMAKMEPFASNRPPVAPNSGAPDYYQGSIAQRSSQSFDQESPSSLDSRSANSQSQDRRDTANWDKLVSQKEGKKATTKRKRGDASSPMEQHADVPTQLDSRNTVVNARKGKMTKAEPSDGLTVKSGAYGKAHGGMTVASSAYPLAEPVFSSPVQYGGALEQDVGSAATLADGHKVAQIGRQNSASEMAMLRQGGPPRDTGKSSVSSIPASSSTPFKEQQLKQLRAQCLVFLAFRNGLPPKKLHLEIALGTTFSREDGTRKELIDHKGKSLSSNELSNVPGMMMPFGGLNNMRQTDKTPSGSSSAGKILEADSLSKGIESPKMMEDRSNLHSDVHALVEERKHLLASKKAEVERQIQERVAAQACSNTMFQQQDSVSARGSLVVNNHLDDVENGNLQVGRSNQPSSVMVLNKPVNPEVINWTGFVNHNEALKGPLQVSAVQQDLPIERRENIPSHFQNIGNNSGGSRNLNSVNPLPSYSLKEHWKPASGTDSDPQGMTMLRDMNVMAKHVSTEQDGNDRLVSADLSASPKYTMSERWIMDQQKKRLLVEQNWVRKQQKTRQRIASCYDKLKENVSSSEDISAKTKSVIELKKLQLLDLQRRLRRERLDDSFKIKRERWKGFNRYVKEFHKRKERIHREKIDRIQREKINLLKVNDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQEAKAAAGRFEHDAEEAGNDSIFEKYETSLENEDESDQAKASSYSWSFEPIDLYISSRNVCIKESIAEQPSSLQGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPGVHKIVYSGPPEERRRLFKERIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDSSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENQLPEKIERLVRCEASAYQKLLMKRVEENLGSIGSSKGRSVHNSVMELRNICNHPYLSQLHADEVDNYIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGSDRGALIDMFNQPGSPYFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQAMRFLLCAFELRSFNC 1374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1962 1374 MobiDBLite consensus disorder prediction 177 274 - -
Dere03g1962 1374 Pfam SNF2-related domain 942 1232 IPR000330 GO:0005524|GO:0140658
Dere03g1962 1374 SMART helicmild6 1287 1363 IPR001650 -
Dere03g1962 1374 MobiDBLite consensus disorder prediction 362 390 - -
Dere03g1962 1374 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 950 1117 IPR014001 -
Dere03g1962 1374 MobiDBLite consensus disorder prediction 370 390 - -
Dere03g1962 1374 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1261 1374 IPR001650 -
Dere03g1962 1374 PANTHER SNF2/RAD54 HELICASE FAMILY 700 1359 - -
Dere03g1962 1374 MobiDBLite consensus disorder prediction 196 229 - -
Dere03g1962 1374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 922 1169 IPR027417 -
Dere03g1962 1374 MobiDBLite consensus disorder prediction 230 259 - -
Dere03g1962 1374 CDD DEXHc_SMARCA2_SMARCA4 935 1171 - -
Dere03g1962 1374 SMART QLQ_2 385 420 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dere03g1962 1374 Gene3D - 929 1178 IPR038718 -
Dere03g1962 1374 Pfam Helicase conserved C-terminal domain 1258 1359 IPR001650 -
Dere03g1962 1374 SMART ultradead3 934 1128 IPR014001 -
Dere03g1962 1374 FunFam Chromatin structure-remodeling complex protein SYD 1179 1362 - -
Dere03g1962 1374 Coils Coil 846 866 - -
Dere03g1962 1374 FunFam Chromatin structure-remodeling complex protein SYD 929 1178 - -
Dere03g1962 1374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1171 1359 IPR027417 -
Dere03g1962 1374 Gene3D - 1179 1359 IPR027417 -
Dere03g1962 1374 CDD SF2_C_SNF 1249 1360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1962 Dere-ChrDere03 31656152 31670086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1962 1258 1357 RAD5 or RAD16-like Gene Family AT5G22750 34.000 9.26e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere03g1962 SNF2_N 3.1e-69 CL0023