Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1955 ATGGAGAAAGATCACGACAACTATCATTCGGCACCTCCTTTTCCTCAGAGCTTTAACGCCGTGGACTACTCTCAGTCTCATCAGTATCACCAAGATCATCATCATCACCATTATCAGAATCTCATGAAGTTTCGGATCGGAGAAGCTTCCGGCGAAAGCAGTCATATCAAGGACAATAACAATGGGATGGTGGATTATATGCTCCACAACAACAATAATCCTCCTCAACAACAACAACCTTGTGGGTTTTACGGCACAGCCACATGTTCTTCTTCTTTTGATAAACTGAGTTTTGCAGATGTGATGCAGTTTGCAGACTTCGGACCCAAGTTGGCCTTGAACCAGAGCAAGAACTGTGAAGGAGAGGAAGAGTCTGGGATGGACCCAGTGTTCTTCCTCAAGTTTCCCGTGTTAAACGACAAGTCGTTGGAAGATGAGAATCTGATGGGGACAGGTGGAGGAGAAAAGGTACAAGAAGAAGGAGTTAGAGAGGATGAACTAGAAGGTCGGGTTTGTGATAGTAATAAGTCGGTGCAGCAGCAGCTTGGGTTTGTAGGGGAAGACATGGAGAAGAATAATGATAACCCTACAAGTACAGTACAGGAGAATATGAACAGTAATAAGAGCAAGAGGAAGAGGCCCAGAACCATCAAGACGAGCGAGGAAGTAGAGAGCCAGCGTATGACTCACATCGCCGTTGAACGCAACCGTAGGAAGCAAATGAACGAGCATCTTCGCGTTCTCAGATCCCTCATGCCTGGTTCTTACGTCCAAAGGGGGGATCAGGCTTCTATAATTGGAGGAGCAATAGAGTTTGTGAGGGAATTGGAGCAGCTTCTTCAGTGCTTGGAGTCACAGAAGAGGAGGAGGCTACTCGGAGAAGCTCATTCAAGGCAAGTTGGAGATTCTTCTCTTGCAATACAGACGCAGCAGCCACTTCAGCCACCATTTTTCCCACCTTTGCCTTTACCAAACGATCAGATGAAGCTTGTGGAGTTTGAGAGTGGGCTTAGGGAAGAAACAGCAGAGAACAAGTCGTGTCTGGCTGACGTGGAAGTGAAGCTTCTAGGATTCGATGCTATGATCAAAATCCTATCAAGAAGAAGGCCAGGCCAGTTGATTAAGACCATTGCTGCACTTGAAGATTTGCAGCTTATCATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAACGTCAAGGTCGCAAGCGATTCAAGGTTCACAGCGGAAGATATAGCCAGCTCTGTCCAACAGATTTTCAGTTTTATTCATGAGAACACTGGAATGTAA 1308 0.4572 MEKDHDNYHSAPPFPQSFNAVDYSQSHQYHQDHHHHHYQNLMKFRIGEASGESSHIKDNNNGMVDYMLHNNNNPPQQQQPCGFYGTATCSSSFDKLSFADVMQFADFGPKLALNQSKNCEGEEESGMDPVFFLKFPVLNDKSLEDENLMGTGGGEKVQEEGVREDELEGRVCDSNKSVQQQLGFVGEDMEKNNDNPTSTVQENMNSNKSKRKRPRTIKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAHSRQVGDSSLAIQTQQPLQPPFFPPLPLPNDQMKLVEFESGLREETAENKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFSFIHENTGM 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1955 435 PANTHER TRANSCRIPTION FACTOR FAMA 63 426 IPR044283 GO:0003700|GO:0010052
Dere03g1955 435 FunFam Basic helix-loop-helix transcription factor 216 291 - -
Dere03g1955 435 MobiDBLite consensus disorder prediction 188 216 - -
Dere03g1955 435 MobiDBLite consensus disorder prediction 149 168 - -
Dere03g1955 435 Pfam Helix-loop-helix DNA-binding domain 226 277 IPR011598 GO:0046983
Dere03g1955 435 Gene3D - 202 291 IPR036638 GO:0046983
Dere03g1955 435 SMART finulus 231 282 IPR011598 GO:0046983
Dere03g1955 435 MobiDBLite consensus disorder prediction 191 205 - -
Dere03g1955 435 CDD bHLH_AtFAMA_like 228 295 - -
Dere03g1955 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 225 276 IPR011598 GO:0046983
Dere03g1955 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 225 293 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1955 Dere-ChrDere03 31585284 31587382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1955 46 435 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 61.369 1.77e-147 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere03g1955 HLH 9.5e-10 No_clan