Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1952 ATGTTGATCCATGATCTTCGTTTTGGTGTGGTAACGGACTTGATTTTACGAGTCACTGATAGAGCGATGATCCATCAGATTTTGATCCGTCTTTTGTTAGGTTTTGAGTTGTTTGGTAATTGGACGGCAAAAATGGCGCAGAGCAACTGGGAAGCAGATAAGATGCTTGATGTTTATATCTATGATTATTTGGTGAAGAAAAAGTTGCATAATACTGCCAAGTCTTTCATGACAGAAGGGAAGGTTGCTCCAGATCCAGTAGCAATTGATGCTCCTGGAGGGTTTCTTTTTGAGTGGTGGTCTGTATTTTGGGATATTTTTATTGCAAGGACAAATGAGAAGCATTCTGAGTCTGCTGCAGCATATTTAGAGGCTCAACAGATTAAAGCAAAAGAACAACAGCAGCTGCAAATGCAGCAGTTGCAACTAATGCGTCAAGCTCAGCTACAACGAAGGGATCCTAATCATCCTCCCCTCAGTGGTACTGTAAATACTATTACTTCAGAAGGAATGCTTGGGCAACCTACTGCTAGTGCATTGGCTGCAAAAATGTATGAGGAACGAATGAAACACTCTAACCCTATGGATACAGAGACATCCCAACCACTTCTAGATGCTAGAATGGCCCTTTTGAAGTCGACTACAAATCACCCTGGCCAGATGGTTCAAGGAAATACCGGAAGTGTGACTGCAGCTTTGCAGCACATGCAGGCTCGAAATCAACAAACCCCTCAGGACATTAAAAGTGAAGTCAACATGGGCACGATGCAGAGATCATTGCCCATGGATCCTTCTTCAATTTATGGGCAAGGAGCAATGCAGTCAAAACCTGGAATAGTAAATGCAGGACTAAATCCAGGAGTTGGTGGTCTCACATTGAAAGGATGGCCTTTAACTGGCATAGATCAAATTCGACCAGGTTTAGGAGCACAAGTTCAAAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCCCAACAACAACAGCAGCAACTCCTGGCACAGGTTCAGGCACAAGGAAATATTGGCAGTTCACCCATGTATGCAGATATGGATCCTCAAAGATTAAGGGGATTAGCTAGGGGTAGTTTGAATGCAAAAGATGGTCAACCAATTGCAAATGATGGATCAATTGGTTCTCCAATGCAATCCACTTCATCTAAGATCAACATGCCACAGATCCAACAATCTACTTCTCAGCAACAGCAGGATTCTTTGCATCCACAGCAACTGCAACAGAATAATCGGAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAACAGTACTGGTACAGGAAACACAATAGGCCCTTCTAATTCTCAACCATCAACCCCATCTACTCATACTCCCTGTGATGGAGTGGCTATGGCTGGTAACTTGCAAAATGTAGGTGGTGTATCCAAAGGTTTAATGATGTATGGTGCTGATGGCACAGGTGGTCTTGCATCGTCCACAAATCAGCTGTTGCAGGATGACATGGAACGTTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCGTTTCTCTCACATGATGATGGTGATGGAAGGGATTTGTTTGGCACCTTAAAACGGAACACTTCAGAGCATGCAACAGATGCTTCAAAGGGCTTTTCCTTCAGTGAAGTTGGCTCCATACGCAAAAGCAATGGCAAAGTTGTTTGCTGTCATTTCTCTTCTGATGGGAAGTTATTGGCCAGTGCTGGACATGACAAGAAGGTTTTTCTCTGGAACATGGAGACACTACAAACAGAGAGCACTCCAGAGGAACATAATCTTATTATTACTGATGTTCGTTTCAGACCAAATTCATCTCAGCTTGCAACCTCTTCATTTGATACAACTGTGCGGCTGTGGGATGCTGCAGATCCAAACTTTTGTTTACATACATATGCTGGTCATACCTCTCATGTGATGTCCCTTGATTTCCACCCCAAGAAAAATGACCTTTTCTGTTCTTGCGACGCTAACAATGAGATTCGTTTTTGGAATCTTAATCAATATGTCAGCACTCGTGCTACCAAGGGAGGCTCTGCACAGGTGAGGTTTCAGCCAAGGATAGGACACCTTCTGGCTGCAGCATCTAGCAATGTTGTATCCCTCTATGATGTTGAGACTGACAGACCAGTGCAGTCATTACAGGGACACACTGCAGATGTGCATTCTGTTTGTTGGGATACCAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAGAGTGTGGTCATTGGCCTCAGGGGAGTGCATTCACGAGCTTAGCTCCAGTGGGAACCCGTTCCATTCTTGCGTTTTTCACCCAAGCTACTCTACTCTCTTGGTTATTGGAAGTTTCCAGTCATTGGAGCTATGGAACATGGCCGAGAATAAATGTATGACAATTCCAACTCATGAGTGCGTGATATCAGCTTTAGCACAATCACCAGTGTCAGGGATGGTTGCATCTGCCAGTCATGACAAGTCCGTCAAGATTTGGAAATGA 2496 0.4399 MLIHDLRFGVVTDLILRVTDRAMIHQILIRLLLGFELFGNWTAKMAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLEAQQIKAKEQQQLQMQQLQLMRQAQLQRRDPNHPPLSGTVNTITSEGMLGQPTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTTNHPGQMVQGNTGSVTAALQHMQARNQQTPQDIKSEVNMGTMQRSLPMDPSSIYGQGAMQSKPGIVNAGLNPGVGGLTLKGWPLTGIDQIRPGLGAQVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNIGSSPMYADMDPQRLRGLARGSLNAKDGQPIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDSLHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMAGNLQNVGGVSKGLMMYGADGTGGLASSTNQLLQDDMERFGDVGSLDDNVESFLSHDDGDGRDLFGTLKRNTSEHATDASKGFSFSEVGSIRKSNGKVVCCHFSSDGKLLASAGHDKKVFLWNMETLQTESTPEEHNLIITDVRFRPNSSQLATSSFDTTVRLWDAADPNFCLHTYAGHTSHVMSLDFHPKKNDLFCSCDANNEIRFWNLNQYVSTRATKGGSAQVRFQPRIGHLLAAASSNVVSLYDVETDRPVQSLQGHTADVHSVCWDTNGDYLASVSQESVRVWSLASGECIHELSSSGNPFHSCVFHPSYSTLLVIGSFQSLELWNMAENKCMTIPTHECVISALAQSPVSGMVASASHDKSVKIWK 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1952 831 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 45 831 IPR044716 GO:0003714
Dere03g1952 831 MobiDBLite consensus disorder prediction 366 458 - -
Dere03g1952 831 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 550 585 - -
Dere03g1952 831 SMART Lish 52 84 IPR006594 GO:0005515
Dere03g1952 831 MobiDBLite consensus disorder prediction 378 453 - -
Dere03g1952 831 Pfam LisH 54 80 IPR006594 GO:0005515
Dere03g1952 831 Pfam Coatomer WD associated region 651 752 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Dere03g1952 831 SUPERFAMILY WD40 repeat-like 544 831 IPR036322 GO:0005515
Dere03g1952 831 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 799 831 - -
Dere03g1952 831 ProSitePatterns Trp-Asp (WD) repeats signature. 569 583 IPR019775 -
Dere03g1952 831 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 635 670 - -
Dere03g1952 831 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 624 IPR001680 GO:0005515
Dere03g1952 831 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 592 624 - -
Dere03g1952 831 SMART WD40_4 585 624 IPR001680 GO:0005515
Dere03g1952 831 SMART WD40_4 710 748 IPR001680 GO:0005515
Dere03g1952 831 SMART WD40_4 543 582 IPR001680 GO:0005515
Dere03g1952 831 SMART WD40_4 751 790 IPR001680 GO:0005515
Dere03g1952 831 SMART WD40_4 628 668 IPR001680 GO:0005515
Dere03g1952 831 SMART WD40_4 792 831 IPR001680 GO:0005515
Dere03g1952 831 PRINTS G protein beta WD-40 repeat signature 818 831 IPR020472 -
Dere03g1952 831 PRINTS G protein beta WD-40 repeat signature 611 625 IPR020472 -
Dere03g1952 831 PRINTS G protein beta WD-40 repeat signature 569 583 IPR020472 -
Dere03g1952 831 Pfam WD domain, G-beta repeat 591 624 IPR001680 GO:0005515
Dere03g1952 831 Pfam WD domain, G-beta repeat 555 582 IPR001680 GO:0005515
Dere03g1952 831 Pfam WD domain, G-beta repeat 796 831 IPR001680 GO:0005515
Dere03g1952 831 ProSiteProfiles Trp-Asp (WD) repeats profile. 635 677 IPR001680 GO:0005515
Dere03g1952 831 CDD WD40 546 831 - -
Dere03g1952 831 Coils Coil 131 151 - -
Dere03g1952 831 ProSiteProfiles Trp-Asp (WD) repeats profile. 799 831 IPR001680 GO:0005515
Dere03g1952 831 ProSiteProfiles Trp-Asp (WD) repeats profile. 717 757 IPR001680 GO:0005515
Dere03g1952 831 ProSiteProfiles Trp-Asp (WD) repeats profile. 550 591 IPR001680 GO:0005515
Dere03g1952 831 Gene3D - 677 831 IPR015943 GO:0005515
Dere03g1952 831 ProSiteProfiles LIS1 homology (LisH) motif profile. 52 84 IPR006594 GO:0005515
Dere03g1952 831 Gene3D - 528 676 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1952 Dere-ChrDere03 31532629 31542010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1952 568 791 U-box Gene Family AT2G33340 28.452 8.70e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Dere03g1952 Coatomer_WDAD 3.5e-07 CL0186