Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere03g1927 | ATGAATATGGGAAGTAGTAACAATACGCAAAAGTTCAAAGGTGTAGTGCCTCAGCAAAATGGTCATTGGGGTGCACAGATATATGCAAATCACCAGAGAATATGGCTTGGAACCTTCAAATCTGAGACAGAAGCAGCCATGGCTTATGACAGTGCCACCATCAAGCTCCGGTCCGGCGAGAGCCACCGGAACTTCCCGTGGAACGATCAGACGGTTCAGGAGCCTCTTTTTCAAAGCCATTACACCACCGAAGCAGTCCTCAGCATGATCAGAGATGGCACCTATCCTTCCAAGTTCGCTTCTTTCCTCTTAAGCACCCAATCCCTAACCCTAACCCTTACCCTAAATGGTGAAGAAGAAATCACAAAGGTCAGGAACAATGGCGAGGAAAAATTCACCTGCACCCAACTCTTCCAGAAGGAACTTACACCAAGTGATGTGGGCAAGCTCAATAGGCTCGTTATCCCCAAAAAACATGCAAGCAGATATTTCCCTTACGTTTCTGGCACGACCGAAGAAGCAGACAATATTAATAATAATTATGGGACGATGATGGATATTAATGGTGACACAGAGCTTGTGTTTTACGACAAGCTAATGAGGTCGTGGAAATTCAGGTACTGCTATTGGAGAAGCAGCCAGAGCTTCGTGTTCACAAGAGGTTGGAACAGGTTTGTGAAAGACAAGAGATTGAGAGCCAAGGATGTTATTGTGTTTTATAAGTGTGAGCCTGTAAGTAATAGGGGAATTAATGGGGGTGAGGTTTTTTCCTTGATTGATGTGATCTATAATGAAGATAATGTTGATGAGAGGAGGCAGTGTTTTGGAGAGAGGAAGAGTTATAGACAAAGTTTTGGGAAAATGTTGAGTTTCAATGATGGGGCAGAAGAAGATGGAGGAGACGATGATGATGAGGAGGATGAGAATGAGGCAAAAGATAGAAAGGAAATGTTGAATAATTCTTCAACACATGATGCACAAAAAGGTTTGAGGCTTTTTGGTGTAAGAATTAATTGA | 1017 | 0.4297 | MNMGSSNNTQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSETEAAMAYDSATIKLRSGESHRNFPWNDQTVQEPLFQSHYTTEAVLSMIRDGTYPSKFASFLLSTQSLTLTLTLNGEEEITKVRNNGEEKFTCTQLFQKELTPSDVGKLNRLVIPKKHASRYFPYVSGTTEEADNINNNYGTMMDINGDTELVFYDKLMRSWKFRYCYWRSSQSFVFTRGWNRFVKDKRLRAKDVIVFYKCEPVSNRGINGGEVFSLIDVIYNEDNVDERRQCFGERKSYRQSFGKMLSFNDGAEEDGGDDDDEEDENEAKDRKEMLNNSSTHDAQKGLRLFGVRIN | 338 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere03g1927 | 338 | Pfam | AP2 domain | 11 | 57 | IPR001471 | GO:0003700|GO:0006355 | |
| Dere03g1927 | 338 | SUPERFAMILY | DNA-binding domain | 11 | 68 | IPR016177 | GO:0003677 | |
| Dere03g1927 | 338 | CDD | B3_DNA | 137 | 240 | IPR003340 | GO:0003677 | |
| Dere03g1927 | 338 | CDD | AP2 | 10 | 68 | IPR001471 | GO:0003700|GO:0006355 | |
| Dere03g1927 | 338 | ProSiteProfiles | B3 DNA-binding domain profile. | 138 | 265 | IPR003340 | GO:0003677 | |
| Dere03g1927 | 338 | SUPERFAMILY | DNA-binding pseudobarrel domain | 136 | 242 | IPR015300 | - | |
| Dere03g1927 | 338 | Gene3D | - | 133 | 252 | IPR015300 | - | |
| Dere03g1927 | 338 | MobiDBLite | consensus disorder prediction | 295 | 310 | - | - | |
| Dere03g1927 | 338 | SMART | B3_2 | 138 | 254 | IPR003340 | GO:0003677 | |
| Dere03g1927 | 338 | SMART | rav1_2 | 11 | 72 | IPR001471 | GO:0003700|GO:0006355 | |
| Dere03g1927 | 338 | ProSiteProfiles | AP2/ERF domain profile. | 11 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
| Dere03g1927 | 338 | MobiDBLite | consensus disorder prediction | 290 | 327 | - | - | |
| Dere03g1927 | 338 | Pfam | B3 DNA binding domain | 138 | 240 | IPR003340 | GO:0003677 | |
| Dere03g1927 | 338 | FunFam | AP2 domain-containing protein RAP2.8 | 10 | 67 | - | - | |
| Dere03g1927 | 338 | Gene3D | AP2/ERF domain | 10 | 67 | IPR036955 | GO:0003700|GO:0006355 | |
| Dere03g1927 | 338 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 8 | 337 | IPR044800 | GO:0003700 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere03g1927 | Dere-ChrDere03 | 31240934 | 31241950 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere03g1927 | 7 | 261 | RAV Transcription Factor Family | AT1G51120 | 58.779 | 2.34e-103 | 306 |
Transcription factors information