Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1925 ATGGACGTTGTTGGAGCTCGCAAGAGGGGAAGGCCTGAAGCCGCCTTTAACGGGAATGGGGGCGTTAAGAAATTCAAGCCAGAAATGGAGTCCATTACAAGTGGTTTAGGAAGCAAATCAAAGCCATGCACAAAGTTTTTCAGCACTTCTGGCTGTCCATTTGGTGAGGCATGTCATTTTTTGCATTATGTTCCTGGTGGCATCAAAGCTGTCTCTCAGATGATTAATGTTGGTAGTAACCCTGCTCATCCACAACTTAGTAGAAATCCTTCAGTTCCACCATCCTTTACGGATGGCCCTTCTCATTCAGCTGTTAAAACTCGATTGTGCAACAAGTATAATTCAGCTGAGGGTTGCAAATTTGGTGATAAATGCCACTTTGCTCATGGAGAGTGGGAGCTTGGCAAGCCTACAGTTCCATCATATGATGATCCTCGCGCTTTGGGACAAATGCAAAGGAAGGTTGGTGGCTGGGTTGAACCCCCACCTCCAGCTCATGGAGCTGCAGCCAGCTTTGGAGCCTCAGCTACTGCTAAGATTAGTATAAATGCTTCACTTGCTGGAGCAATCATTGGGAAAAATGGTGTCAACTCTAAGCAAATTTGCCGGGTGACTGGAGCAAAACTTTCTATCAGAGATCATGATTCTGATCCAAACCTCAAGAACATTGAGCTTGAGGGAAGCTTTGATCAGATCAAGCAAGCAAGTGCAATGGTTCATGAACTTATTGCGAATATTGGATCTGTCTCTAGGCCTTCAATGAAAAACATTACAGCGCATGCTTCTGCCCCGCTGAGCAACTTGAAGACTAAGCTGTGTGAAAAATTTGCCAAGGGTTCGTGCACTTTCGGGGAGAGGTGTCACTTTGCGCATGGTGAAGATGAGTTACGTAAGCCTGTTATATGA 906 0.4547 MDVVGARKRGRPEAAFNGNGGVKKFKPEMESITSGLGSKSKPCTKFFSTSGCPFGEACHFLHYVPGGIKAVSQMINVGSNPAHPQLSRNPSVPPSFTDGPSHSAVKTRLCNKYNSAEGCKFGDKCHFAHGEWELGKPTVPSYDDPRALGQMQRKVGGWVEPPPPAHGAAASFGASATAKISINASLAGAIIGKNGVNSKQICRVTGAKLSIRDHDSDPNLKNIELEGSFDQIKQASAMVHELIANIGSVSRPSMKNITAHASAPLSNLKTKLCEKFAKGSCTFGERCHFAHGEDELRKPVI 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1925 301 SUPERFAMILY CCCH zinc finger 266 298 IPR036855 GO:0046872
Dere03g1925 301 SMART c3hfinal6 104 131 IPR000571 GO:0046872
Dere03g1925 301 SMART c3hfinal6 37 64 IPR000571 GO:0046872
Dere03g1925 301 SMART c3hfinal6 267 293 IPR000571 GO:0046872
Dere03g1925 301 Gene3D K Homology domain, type 1 171 261 IPR036612 GO:0003723
Dere03g1925 301 MobiDBLite consensus disorder prediction 1 22 - -
Dere03g1925 301 Coils Coil 301 301 - -
Dere03g1925 301 CDD KH-I_AtC3H36_like 179 243 - -
Dere03g1925 301 FunFam Zinc finger CCCH domain-containing protein 99 136 - -
Dere03g1925 301 Pfam RNA-binding, Nab2-type zinc finger 42 62 - -
Dere03g1925 301 Pfam KH domain 178 240 IPR004088 GO:0003723
Dere03g1925 301 ProSiteProfiles Zinc finger C3H1-type profile. 37 65 IPR000571 GO:0046872
Dere03g1925 301 Gene3D - 262 298 - -
Dere03g1925 301 Gene3D - 100 136 - -
Dere03g1925 301 MobiDBLite consensus disorder prediction 79 100 - -
Dere03g1925 301 ProSiteProfiles Type-1 KH domain profile. 175 239 - -
Dere03g1925 301 SUPERFAMILY CCCH zinc finger 102 135 IPR036855 GO:0046872
Dere03g1925 301 PANTHER CCCH ZINC FINGER/TIS11-RELATED 41 299 IPR045877 GO:0003729
Dere03g1925 301 FunFam Zinc finger CCCH domain-containing protein 262 298 - -
Dere03g1925 301 ProSiteProfiles Zinc finger C3H1-type profile. 267 294 IPR000571 GO:0046872
Dere03g1925 301 SUPERFAMILY CCCH zinc finger 38 63 IPR036855 GO:0046872
Dere03g1925 301 ProSiteProfiles Zinc finger C3H1-type profile. 104 132 IPR000571 GO:0046872
Dere03g1925 301 SMART kh_6 174 244 IPR004087 GO:0003676
Dere03g1925 301 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 167 246 IPR036612 GO:0003723
Dere03g1925 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 106 131 IPR000571 GO:0046872
Dere03g1925 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 269 293 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1925 Dere-ChrDere03 31228114 31231321 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere03g1925 KH_1 7.7e-11 CL0007