Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1921 ATGGCAGATGAAGAAGAAAAGAGAGAAAGAAATCATTGTGATGACATTGGTCACTCTTTTATACCCCTACAAACTAATCTAAAAATGCCAGATTCTAGAGAAAATGAAGTTACCCTTCAAAAGGTAATTGGACTACATAAACTTTTTGATGCAGGATTATCTTTTCCAACCATTCCGCAAGAATTTGTTTGCCCTGTAACTGGAAATCTGTTTGAGGAACCCGTCACTATAGAGACTGGTCAAACCTTCGAACGAGCAGCCCTCAAGTCATGGTTTGACAAGGGACACAGAACATGTCCGGTAACAGGAGCTACTTTAAATTTTATAGCTCTGCCACTAACTAACCTCGTTTTGAAGCGTCTGATTCATAATTGGAAGTCAGAGCATTTAAGCCAGCTCCTGGATTCCACTTCTCAAATCTTGGAAAATTCAAGGGAATCTAAGTTTAAAAATAGGGATGAGATTGTTACTTTCAAATTAGAGAGCTTTCTCAGAGTGTTAAGTGAAGAGGACAAAATAACTTATGCCAAATGTCTAGTGTCTTTAGGGGTTTTAGCATCTCTTCTTAAGAGGTTTGAATTGGGAAATTTAGAAGAGAAAACACATGTGGTGGCACTCTTGCTAAATTTTATCGCGGCAGACTCTTGTTGCATTTATCAGATAGTGAGAGATATTAACAAAAAATGTCTTCTTGAGCTTCTTCACAGCAAGGAGGTTACTGCAAGAAGTAACGCAATATTATTGCTTACTGAAGTTTTAGCTCTAAGAAGAAGAAAGGATGTTACTTTATTCTTTACTGGCTTGAAGGGCGAGGATGTTTTTATGATAATGCATGTTCTGCTCATGTATCTTAAGAATTCTACACCACTTCAAAAGCCCTTGATTGGTGTCCTCTTGTTGCACTTTGATCTACTGGTTGAGTCTCAAAAGTATAGCTTATACAGAGAACAGGCTGTGAATTCCATTTCGGTGGCTCTTAATGCCAGCTTAGATGATGAGAAAGTCCGAGAAAAGTGTTGTAGAGCACTTTTCGTCTTGGCAGGGCATTTTTCTTCCACTGGAAGGATACTGACCAAAAATAGCATTTTAGAAAAAGTGGGATATATGAATGATATTTCAGAAGTCAAAACTCCTGACCATGAGGAAGAGGGTTTATTGTGGGATGGGGCCATTTCGTTTGAAGCAGAAGAAGAATGGACCAAAGAGTGGTTGGTAAACTTGTTAGAATCAATGATTGGTGATGGAGAAAGCTCATTTTTGAAGTCTATTTCTAGAGGTTTAGACTCTAGGCACCCAGATTTGGTCAGGATGTGTCTAATAACTGTTGCTTGGTTGAGCTCCTCACTTTCTGCACAATGTAATGCTGGATTACACCTTGCTGCCTTCTTAGCCGTTATCTCTGAAATAAAAGAAGTCTTGGAAAACGGAGAACTTGAACTCAAGACTCTTGCTTCTATTTGCTTGCTTAATTTCAGCAAAATATCAGAATGCAGAACACTTTTAATGACTATGGCAGATGATATTGCTGATCCTCTTCTTAAACTCGCTGATGTGACATGGACTGCAAAGCAGCTGCATGCGATTGTTTCTGGGGAGGATTTGTAA 1605 0.3882 MADEEEKRERNHCDDIGHSFIPLQTNLKMPDSRENEVTLQKVIGLHKLFDAGLSFPTIPQEFVCPVTGNLFEEPVTIETGQTFERAALKSWFDKGHRTCPVTGATLNFIALPLTNLVLKRLIHNWKSEHLSQLLDSTSQILENSRESKFKNRDEIVTFKLESFLRVLSEEDKITYAKCLVSLGVLASLLKRFELGNLEEKTHVVALLLNFIAADSCCIYQIVRDINKKCLLELLHSKEVTARSNAILLLTEVLALRRRKDVTLFFTGLKGEDVFMIMHVLLMYLKNSTPLQKPLIGVLLLHFDLLVESQKYSLYREQAVNSISVALNASLDDEKVREKCCRALFVLAGHFSSTGRILTKNSILEKVGYMNDISEVKTPDHEEEGLLWDGAISFEAEEEWTKEWLVNLLESMIGDGESSFLKSISRGLDSRHPDLVRMCLITVAWLSSSLSAQCNAGLHLAAFLAVISEIKEVLENGELELKTLASICLLNFSKISECRTLLMTMADDIADPLLKLADVTWTAKQLHAIVSGEDL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1921 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 132 IPR013083 -
Dere03g1921 534 ProSiteProfiles U-box domain profile. 57 132 IPR003613 GO:0004842|GO:0016567
Dere03g1921 534 Gene3D - 150 529 IPR011989 -
Dere03g1921 534 PANTHER OS04G0584500 PROTEIN 47 532 - -
Dere03g1921 534 SUPERFAMILY ARM repeat 129 514 IPR016024 -
Dere03g1921 534 CDD RING-Ubox_PUB 59 106 IPR045210 -
Dere03g1921 534 SUPERFAMILY RING/U-box 52 129 - -
Dere03g1921 534 Pfam U-box domain 58 129 IPR003613 GO:0004842|GO:0016567
Dere03g1921 534 SMART Ubox_2 61 125 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1921 Dere-ChrDere03 31207118 31211303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1921 57 129 U-box Gene Family AT1G23030 48.649 2.05e-15 77.4