LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere03g1914	ATGGATAACAAGTTTACCAATATGGAAATCTCCATGCAAAAGGAATTGTCAAATTGTTTTAAAGAAATGGCAATGGGATCAAAGATTTTGGAGGATCCAATTATGAGAGGATCACAGAGTCTCGCTGCTTCTTCTTCTCATCACATTCATGTACCAAGTGGGATGGATTCAGTTTCATCAATAGCATCATCTGAAAGGTTTCTATCAGTTTCAGATTCCATATCAACAACAGAAGAGCTACCTGGTGCCACTTTCATTTGTCATCTTCCTCCAAGGTTCACTGGTCAAGAGGAAATCACCAAAGTGCAACAGAAATATCAGTTCCTTTCTGAATTCAATTCCATTTGTAATAATCCTAGTGCTTCAACCTCAGGAAACAGAGAAAGGTTCATTCCTCTGAATCTGTTGGAAACACTTCCAGCATCACCCAGAGCGCACCCATCTGATAAGCCAGCTTCTCCAGCTTCTTCGACTGCTACACCAAGATTTCCATATTTGACATTGTTTCTGCAGGAACCCTCCAAGTTATTTTCAACATCCTCAAAGATCACTCAGTCACAAGGCAAGCCCAAAAACTGTGAATTACTGCCAGCAACTTCAGACCCTTCATTTTCTGTGTCCCAGTTTCATCCAATTCGGAACCAAGCAGGCAAAGGTACACTCAAAATGAACCAGAATCTTAAAAACTTCCGATCCAAGTCTTTCAATGACTATTGCTTGAGCACCACCAAGACTCAACCTATGAAGTATTCTGGACGAGGCAAGCTGTTCAAAGGGGTGAGGCAAAGACACTGGGGTAAATGGGTCGCAGAGATTAGATTACCAAGAAATAGAACAAGGGTTTGGCTAGGGACATTTGATACAGCTGAAGATGCAGCCATTGCTTATGACACTGCTGCTTACATACTACGTGGAGAATATGCTCAATTGAACTTCCCAGATCTAAAGCATCATATTAAGGCCAATTCTTTAAGTGGAACAACTGCAGCACTTCTGGAGGCAAAGCTTCAAGCAATATCACAAGGAGTTTCTTCGCAAGGAATGCCCAGTGATTCCCTTTCTGGGTCATTGAATAAGCACACAGTTGAGAATGCCAGATTGAATAGTAAAAACCAGAAGCCAGATAGAAAAGATTGGCAGTTTGAGATGGAGAGTCGGGTTGGAGATGACACAGTTGAGAGAAGCAGAAATAATCACCAAGAGATATCAGATGAAGAAGCTATACAGTTAAGTAGAATGCCTTCCTTAGACATGGACATCATTTGGGATTCCCTTTTCGTCTCTGATTCATGA	1293	0.4145	MDNKFTNMEISMQKELSNCFKEMAMGSKILEDPIMRGSQSLAASSSHHIHVPSGMDSVSSIASSERFLSVSDSISTTEELPGATFICHLPPRFTGQEEITKVQQKYQFLSEFNSICNNPSASTSGNRERFIPLNLLETLPASPRAHPSDKPASPASSTATPRFPYLTLFLQEPSKLFSTSSKITQSQGKPKNCELLPATSDPSFSVSQFHPIRNQAGKGTLKMNQNLKNFRSKSFNDYCLSTTKTQPMKYSGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPDLKHHIKANSLSGTTAALLEAKLQAISQGVSSQGMPSDSLSGSLNKHTVENARLNSKNQKPDRKDWQFEMESRVGDDTVERSRNNHQEISDEEAIQLSRMPSLDMDIIWDSLFVSDS	430

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere03g1914	430	ProSiteProfiles	AP2/ERF domain profile.	256	313	IPR001471	GO:0003700\|GO:0006355
	Dere03g1914	430	SUPERFAMILY	DNA-binding domain	256	314	IPR016177	GO:0003677
	Dere03g1914	430	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	117	425	-	-
	Dere03g1914	430	MobiDBLite	consensus disorder prediction	369	406	-	-
	Dere03g1914	430	Gene3D	AP2/ERF domain	256	314	IPR036955	GO:0003700\|GO:0006355
	Dere03g1914	430	PRINTS	Ethylene responsive element binding protein signature	257	268	IPR001471	GO:0003700\|GO:0006355
	Dere03g1914	430	PRINTS	Ethylene responsive element binding protein signature	279	295	IPR001471	GO:0003700\|GO:0006355
	Dere03g1914	430	CDD	AP2	255	315	IPR001471	GO:0003700\|GO:0006355
	Dere03g1914	430	MobiDBLite	consensus disorder prediction	363	408	-	-
	Dere03g1914	430	FunFam	Ethylene-responsive transcription factor 2	255	314	-	-
	Dere03g1914	430	SMART	rav1_2	256	319	IPR001471	GO:0003700\|GO:0006355
	Dere03g1914	430	Pfam	AP2 domain	257	305	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere03g1914	Dere-ChrDere03	31105104	31106396	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere03g1914	131	425	AP2-EREBP Transcription Factor Family	AT4G13620	45.215	5.47e-73	232

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dere03g1914		AP2	2.1e-12	CL0081