Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1913 ATGGCATCAACGTCTGGTGCCTGCAAGACTCCATTCCCTGTGAAAGAGGCAGCTTCGAACTATCATCCGTATCCTGCTCCTCTTGCAAAATATGAGGATGTTGCAGCTGATCCCAGGCTCTTTATGCATACCTTGGAGAAGCTTCACGCTTCTATGGGTACCAAGTTCATGATCCCCATCATAGGTGGAAGGGAACTAGATTTGCATAGGCTCTTTGTGGAAGTGACTTCTCGTGGAGGCATTGAGAAGATTATTAGAGAGAGAAGATGGAAAGAAGTAACTGCTGTTTTTAATTTTCCATCTACAGCGACAAATGCTTCTTTTGTCTTGCGGAAGTACTATGCTTCATTGCTTTACCATTACGAACAAATATACTATTTTAAGGCCCATGGATGGACCCCTACAACTCCTGATGCTTTGCAGAGTCAAACAGTGATGCCAGTTCCTGCTCAAAGAATGCAGTTTTTGCATCCTCCAGTTAATGCTGCTGAATTGTCCGAAGCAATTCCAGCTTCTCCTATAGGAACTCCAGTGATTGGGGTGATTGATGGAAAATTTGATAGTGGATATCTTGTTACCGTCACAATAGGTTCACAGAAACTTAAAGGTGTACTATATCAGGCTCCACAAAACCCTGTACTGCCAGCAACACTGCAACATAATAGTGCTTCAGTTAATAACAATAATACGTCAACAGCTTCATTGGGTGTCCATCGTCGCCGGCGCAAGAAATCTGAGATAAAAAGGAGAGATCCTGCCCATCCAAAACCCAACCGAAGTGGGTACAATTTCTTTTTCGCAGAGCAGCATGCAAGATTGAAACCACTTCATCATGGGAAGGACCGAGAAATAAGTAGGATGATTGGTGAACTCTGGAACAAATTAAAAGAGCCAGAGAAAGCGGTTTATCAAGAGAAGGCTCTTAAGGATAAAGAGAGGTACAGAGTAGAAATGGAGGATTATAGGGAGAAATTGAAGACGGGCCAGGTTATAAGTGATGTTGTGCCGCTACAACAACGACTTCCTGATACTGATATGATGGATGCTGACTTAAAATTGGATGAAGCCGAGGGAGGTGAATCTCCTCAAACACCGGATGAGAGCAGTTCTGGTGAAAGTGACTATGAAGATGATAAAATTACAGAGCATAATTTGGGCATGGACGCATCTCCTGGAATAGGAGGAGTGGGTGCTGAATCTAGCTTTCTGGGTGCAGAGAAGTTATCAAAGGAGGGAGAAATTGAGTTTCAGATGAAAGAAGGGGAGGATGATGGAGATCAACAAGCTCAAAAGATGGATGAGAGCAAAAGCCTTGAATCTGCGGCGATGGAGGTTGAGGATGAAAGTCTGTTCAATTATACCATCAAAGGCCAGTGGAGGGAAGTTCTTGAAGAATGCAAGAACAACCCAAAAGCCTTAGAGGCCAAGATCACAAAATCAGAAGACACAGTGATACACACAGCAATCTATGTAGGTCAGACCAATTTTGTGACAACCCTCCTAGATAAAATCCAAGAGGATGTGTCTGTAAGGATCCTAAGCATGCAAAACTCAAAGGGAGACACTCCTCTACACTTGGCTGCAGGGGTTGGTAACGTGGAAATCTGCAGAAGCATAGCAAGAAGGAACCCTGATCTCATTTCGTGTCGAAACATCGAAGGCGAAACACCACTGTTCTTGGCAGCTCATTTTGGTAAGAAAGATGCATTCTTTTGCCTCTATGGTTACCAGAAGAACAAAGATGACTACTCTCTGAGTAGGAAAAGGAGAGGGGACACAATCCTTCATTCGGCAATATCTAGTGAACACTTCGATTTGGCATATCAAATCATTCATTTATACCCAAGCCTTGCGGCGTATAAGAATGAAGAAGGTGTGTCACCTCTTCATATCCTTGCCAGGAAGCCTAATTGCTTTAGAAGCAGCACAAGGATGGAGACTTTTGATGGTCTCATCTACAAATGTTTGATAGTTGGTGAACTGAAGGAGGAAATTGAGGAACCCAGATGTAGAGAAGATAGAAAAACTTTTGAGTATCCAAAAAACTATGGAACATGCATGAACTTCCTAGAAACTTTGAAGTCCCTACTTAAAGTATTATTAGGCAAAAATAATGGTAGAAGTGCAACTGATGAAGAGAATCCCTCATGCAAATACTACCTCAAAAGTGAGCAAGGAACAAGGAAACGAAAGAAAAGCCATCGATACCCTCCCAATTGGGAAACCACGATTCGATTACTAGTCATGATGATGAAGCTTTTACTGATCGTTTTTGGTGTAGGAACATCGTGGTTAAGGAAAATCCAGAGAAAGAAGGAGAAACACGTGTGGTCAAAGCAAGTAATGGAGGAACTAGTTCGAAGTGCGTCTTCATTCAGATACGACTACACGGGAAGTAAGCCTCGGGAGTTTGAAAGCAAGAGGGGAAAGGAGGAGGTGGAGAAGCAGGTGACAGAGCAGGAGAAGAAGAAGACGATAGAGACCCCAATACTGACGGCGGCGAAGATGGGGGTGACGGAGATGGTGGAGAGGATACTGGACACGTTCCCGCTGGCAATACAGGACGTGGACGCGCAGAACAAGAACGTGGTGCTGCTGGCGATAGAGAATAGGCAGCCTCATGTGTACAGCCTGTTGAGGAAGAGGGAGTTCGTGAAGGAGAGTGCCTTCAGGCATGTGGACGTAGATGGGAACAGTGCCCTGCATCTTGCTGCTGTGTACAAGGAGCACAAGCCTTGGCGTGTGCCTGGTGCTGCCATGCAAATGCAGTGGGAATACAAGTGGTACAAGCTAGTGAAGGACTCTATGCCACCAAACTTCTACGCTCGATACAACAACCATGGCAAAACAGCGAAGCAGATCTTCGTGACGACACACGCAGGACTGGTGAAAGAGGGAAGCAAGTGGCTCACCAAGACCGCCGAATCCTGCTCCGTCGTGGCCGCCCTCGTGGCCACCGTCGCATTCACCACATCCACCTCCATCCCCGGCGGCTCCAACCAAGACACGGGCGTGCCCCTCCTCCGAGGCCGGTCTCTGTTCGGCGTCTTCACCGTCGCATCCCTGGTGGCCCTCTGCTCCTCCGTCACCGCCCTCGTCCTCTTCCTCTCCATCCTCACTTCGCGGTTCCAAGAGAAGGACTTCGTCCTGGGGCTGCCCAGGAAGCTTCTGATGGGGATGTTTTCGCTCTTCACTTCCATAGCCTCCGTGCTGATCTCCTTCTGTGCGGGGCATTTCTTCATCGTCGAAGGGGGCCTCCGAACTGCCGTTTATCCCATATACGCAGCGACACTGATGCCGGTGTCGTTTTTCGCATTGGTTCAGCTTCCTCTGTATGTTGATCTTATGTTGGCTATGATCCGGAAAGTTCCTCAACGTAGCTACAAGGCTATCTCTAATTACTAG 3405 0.4664 MASTSGACKTPFPVKEAASNYHPYPAPLAKYEDVAADPRLFMHTLEKLHASMGTKFMIPIIGGRELDLHRLFVEVTSRGGIEKIIRERRWKEVTAVFNFPSTATNASFVLRKYYASLLYHYEQIYYFKAHGWTPTTPDALQSQTVMPVPAQRMQFLHPPVNAAELSEAIPASPIGTPVIGVIDGKFDSGYLVTVTIGSQKLKGVLYQAPQNPVLPATLQHNSASVNNNNTSTASLGVHRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHHGKDREISRMIGELWNKLKEPEKAVYQEKALKDKERYRVEMEDYREKLKTGQVISDVVPLQQRLPDTDMMDADLKLDEAEGGESPQTPDESSSGESDYEDDKITEHNLGMDASPGIGGVGAESSFLGAEKLSKEGEIEFQMKEGEDDGDQQAQKMDESKSLESAAMEVEDESLFNYTIKGQWREVLEECKNNPKALEAKITKSEDTVIHTAIYVGQTNFVTTLLDKIQEDVSVRILSMQNSKGDTPLHLAAGVGNVEICRSIARRNPDLISCRNIEGETPLFLAAHFGKKDAFFCLYGYQKNKDDYSLSRKRRGDTILHSAISSEHFDLAYQIIHLYPSLAAYKNEEGVSPLHILARKPNCFRSSTRMETFDGLIYKCLIVGELKEEIEEPRCREDRKTFEYPKNYGTCMNFLETLKSLLKVLLGKNNGRSATDEENPSCKYYLKSEQGTRKRKKSHRYPPNWETTIRLLVMMMKLLLIVFGVGTSWLRKIQRKKEKHVWSKQVMEELVRSASSFRYDYTGSKPREFESKRGKEEVEKQVTEQEKKKTIETPILTAAKMGVTEMVERILDTFPLAIQDVDAQNKNVVLLAIENRQPHVYSLLRKREFVKESAFRHVDVDGNSALHLAAVYKEHKPWRVPGAAMQMQWEYKWYKLVKDSMPPNFYARYNNHGKTAKQIFVTTHAGLVKEGSKWLTKTAESCSVVAALVATVAFTTSTSIPGGSNQDTGVPLLRGRSLFGVFTVASLVALCSSVTALVLFLSILTSRFQEKDFVLGLPRKLLMGMFSLFTSIASVLISFCAGHFFIVEGGLRTAVYPIYAATLMPVSFFALVQLPLYVDLMLAMIRKVPQRSYKAISNY 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1913 1134 Gene3D - 443 655 IPR036770 -
Dere03g1913 1134 MobiDBLite consensus disorder prediction 221 261 - -
Dere03g1913 1134 SMART bright_3 36 127 IPR001606 GO:0003677
Dere03g1913 1134 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Dere03g1913 1134 ProSiteProfiles Ankyrin repeat profile. 519 551 IPR002110 GO:0005515
Dere03g1913 1134 Gene3D - 26 132 IPR036431 GO:0003677
Dere03g1913 1134 FunFam High mobility group B protein 15 29 142 - -
Dere03g1913 1134 CDD HMG-box_AtHMGB9-like 255 321 - -
Dere03g1913 1134 Coils Coil 304 324 - -
Dere03g1913 1134 SUPERFAMILY Ankyrin repeat 822 908 IPR036770 -
Dere03g1913 1134 MobiDBLite consensus disorder prediction 419 439 - -
Dere03g1913 1134 SMART ARID_2 32 122 - -
Dere03g1913 1134 SMART ANK_2a 825 858 IPR002110 GO:0005515
Dere03g1913 1134 SMART ANK_2a 519 548 IPR002110 GO:0005515
Dere03g1913 1134 SMART ANK_2a 480 510 IPR002110 GO:0005515
Dere03g1913 1134 SMART ANK_2a 553 582 IPR002110 GO:0005515
Dere03g1913 1134 SMART ANK_2a 590 619 IPR002110 GO:0005515
Dere03g1913 1134 Gene3D High mobility group box domain 239 334 IPR036910 -
Dere03g1913 1134 ProSiteProfiles Ankyrin repeat region circular profile. 519 546 - -
Dere03g1913 1134 SUPERFAMILY ARID-like 33 135 IPR036431 GO:0003677
Dere03g1913 1134 Gene3D - 799 933 IPR036770 -
Dere03g1913 1134 MobiDBLite consensus disorder prediction 354 377 - -
Dere03g1913 1134 SMART hmgende2 254 323 IPR009071 -
Dere03g1913 1134 SUPERFAMILY HMG-box 243 327 IPR036910 -
Dere03g1913 1134 Pfam Ankyrin repeats (3 copies) 448 540 IPR002110 GO:0005515
Dere03g1913 1134 MobiDBLite consensus disorder prediction 221 235 - -
Dere03g1913 1134 Pfam ARID/BRIGHT DNA binding domain 40 122 IPR001606 GO:0003677
Dere03g1913 1134 SUPERFAMILY Ankyrin repeat 450 633 IPR036770 -
Dere03g1913 1134 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 255 322 IPR009071 -
Dere03g1913 1134 Pfam HMG (high mobility group) box 255 322 IPR009071 -
Dere03g1913 1134 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Dere03g1913 1134 FunFam High mobility group B protein 15 237 332 - -
Dere03g1913 1134 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 372 - -
Dere03g1913 1134 Pfam Domain of unknown function 968 1080 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1913 Dere-ChrDere03 31074281 31084119 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1913 27 353 ARID Transcription Factor Family AT1G04880 64.368 4.08e-130 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Dere03g1913 PGG 2.2e-23 No_clan