Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1900 ATGGGACTGTTCTCAGAGGCATTGGAAGTTCGTGTGGCTGATATATATTGTTTTCACTGTGTGTGGCTTCTGATCCTCAAAAGCGAGTTGGAATGTTTGGACCCATTTGTGTTGTTAATTCACTTCTCAGTGACTCCACCTGGGGGATTTCCTGATCATCCACACAGAGGTTTTGAGACTGTCACCTACATGCTCCAGGGAGCTATAACCTATCAAGATTTTGCTGGACACAAGGGTACTATTAGATCTGGTGATGTTCAGTGGATGAGAGCAGGAAGGGGGATTGTTCACTCTGAAATGCCAACAGGAGGAGGAACCCACACAGGACTTCAACTATGGATCAATTTACCATCCAAACATAAAATGACTGAACCAGGGTACCAAGAACTTGTGAGCAAGGAGATACCAAGAGTGGAGAAAGATGGAGTAGAAATTAGGGTTTTGGCAGGAGAAGCACTTGGAGTGACTGCACCATTTTACACCCAAACTCCGATCATGATGCTGGATATCACTCTCAAGCCCTCGTCTGAACTGCATAAAAGAATCCCAGAATCTTCATGGAACTGCTTTGTTTACGTGATTGAAGGAGAGGGTGTGTTTGGCTCCCGGAGTTCGCCGCCGGTGACGGCGCACCAGGCTGCGGTGCTGGGCGGCGGAGATGGGGTTAGTGTGTGGAACAAGTCGTCAAAGGTGGGTCTGAGGTTTCTGCTGATAGGAGGAGAGCCATTGAAGGAGGGTGTGGCTCACTGTGGACCATTTGTGATGAACACAGAGTCTGAGATTGAGCAAACTCTCGAGGATTATCGTCACTTTAAGAATGGATTTGAGAAGGCTAAATATTGGAAGTCTCAATGA 855 0.4713 MGLFSEALEVRVADIYCFHCVWLLILKSELECLDPFVLLIHFSVTPPGGFPDHPHRGFETVTYMLQGAITYQDFAGHKGTIRSGDVQWMRAGRGIVHSEMPTGGGTHTGLQLWINLPSKHKMTEPGYQELVSKEIPRVEKDGVEIRVLAGEALGVTAPFYTQTPIMMLDITLKPSSELHKRIPESSWNCFVYVIEGEGVFGSRSSPPVTAHQAAVLGGGDGVSVWNKSSKVGLRFLLIGGEPLKEGVAHCGPFVMNTESEIEQTLEDYRHFKNGFEKAKYWKSQ 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1900 284 Pfam Pirin 29 114 IPR003829 -
Dere03g1900 284 CDD cupin_pirin_N 19 117 - -
Dere03g1900 284 Pfam Pirin C-terminal cupin domain 167 273 IPR008778 -
Dere03g1900 284 Gene3D Jelly Rolls 136 243 IPR014710 -
Dere03g1900 284 PIRSF Pirin 21 282 IPR012093 -
Dere03g1900 284 Gene3D Jelly Rolls 25 269 IPR014710 -
Dere03g1900 284 SUPERFAMILY RmlC-like cupins 25 282 IPR011051 -
Dere03g1900 284 CDD cupin_pirin_C 164 242 - -
Dere03g1900 284 PANTHER PIRIN-RELATED 27 283 IPR012093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1900 Dere-ChrDere03 30838100 30840095 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1900 25 279 Calmodulin-binding Proteins AT3G59220 60.156 2.63e-112 324