Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1898 ATGAGAGCCTTCAGGCACACCTTTTCACTGTTCAATTGGAGACCTTCTTCTTCTACTACTTCATCTCTGCGAATTATCATGTCATCATCAGATGAATCCTCGGTTTTTGAGACACCCAGATTGGTTCTCAAGAAGATTCTGGCCAAATCTCAACACGAAGGGGATGGAGCTGTTGTTAGAAGAGGCATTGGAAGGAGCGAGTTGAAGAGTTTGGATCCTTTTCTGATGCTGGATCACTTCTCAGTGTCTCCACCTGGAGGTTTTCCTGACCATCCACACAGAGGTTTTGAGACTGTCACATACATGCTGCAGGGAGCCATAACTCATCAAGATTTTGCTGGGCGTAAGGGTACAATAAGAACAGGTGATGTTCAGTGGATGACCGCAGGCAGAGGAATAATTCACTCTGAAATGCCTGGAGGAGAAGGAACCCACAAGGGATTGCAGCTATGGATCAATTTATCTTCCAGAGATAAGATGATTGAACCGAATTATCAAGAACTTCTAAAAGAGGACATACCAGTAGCAGAGCAAGATGGGGTTGAAGTGAGGATCATAGCAGGAGAAGCAATGGGAGTTCATTCACCAGTTTACACTAGAACCCCAACTATGTTCCTTGATTTCTCTCTCAAGCCAGGAGCTCATTGGCATCAGAACATTCCAGAATCATGGAATGCCTTTCTGTATGTGATTGAAGGAGAAGGGGTTTTCGGGTCCCTGAGTTCATCACCAATGGGAGCTCACCATGTCTTGGTTTTGAGCCTAGGAGATGGTCTTAGTGTCTGGAACAAGTCTTCAAAGCCTTTGAGGTTTGTGCTGATTGCAGGCCAGCCACTAAATGAGCCAGTGGCTCAGTATGGACCCTTTGTGATGAACACACAGTCTGAGATTGAAAAGACTATAGAGGACTATCACTATTGCAAGAATGGGTTTGAGATGGCCAAATATTGGAGATCTCAATAG 963 0.4486 MRAFRHTFSLFNWRPSSSTTSSLRIIMSSSDESSVFETPRLVLKKILAKSQHEGDGAVVRRGIGRSELKSLDPFLMLDHFSVSPPGGFPDHPHRGFETVTYMLQGAITHQDFAGRKGTIRTGDVQWMTAGRGIIHSEMPGGEGTHKGLQLWINLSSRDKMIEPNYQELLKEDIPVAEQDGVEVRIIAGEAMGVHSPVYTRTPTMFLDFSLKPGAHWHQNIPESWNAFLYVIEGEGVFGSLSSSPMGAHHVLVLSLGDGLSVWNKSSKPLRFVLIAGQPLNEPVAQYGPFVMNTQSEIEKTIEDYHYCKNGFEMAKYWRSQ 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1898 320 CDD cupin_pirin_C 202 278 - -
Dere03g1898 320 Gene3D Jelly Rolls 174 279 IPR014710 -
Dere03g1898 320 Gene3D Jelly Rolls 53 305 IPR014710 -
Dere03g1898 320 Pfam Pirin C-terminal cupin domain 205 310 IPR008778 -
Dere03g1898 320 CDD cupin_pirin_N 57 154 - -
Dere03g1898 320 PANTHER PIRIN-RELATED 27 320 IPR012093 -
Dere03g1898 320 PIRSF Pirin 38 318 IPR012093 -
Dere03g1898 320 FunFam pirin 53 187 - -
Dere03g1898 320 SUPERFAMILY RmlC-like cupins 40 318 IPR011051 -
Dere03g1898 320 Pfam Pirin 60 152 IPR003829 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1898 Dere-ChrDere03 30827907 30829828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1898 38 315 Calmodulin-binding Proteins AT3G59220 65.714 6.99e-134 380