Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1895 ATGTACCATTCTTCCTCATCCTCCTCGTCCCAAAAATCCATATCCCAAAGCGGGTTAACCCGCTATGGTTCCGCCCCCGGCTCACTCCTAACCAACGCCGTCGATGCCGTTATCGGAGGAGCCGACCCCGAATTCTCTGCTTCTGCTGTCGGATCACGCCCTCCGGTGGTCCATTTCTTCTCCGGCGACTCCTCCGAGTCCACCTGCAAAGTCAACTCATCCTCCGATCCAAAAGAGCAGCCGCCCAGACCCGCCTTGCAAAGATCGTACGGAGTCCATGACGGAGCCGCCGTCGGCTTTGTCGGCTCTTCTTCGGCTTTGCTCCGTCAGAGAAGCTCGCCGGCTGGCTTCCTCAGCCATCTTACTGCTACTCAAGCTGACAATGCAGGCTTCTCAATTTCAAGGGGCTCTGGAAGCTACAGCTCACAAGGTGTCTCCAATAGTGGCCATGGAGTATCAAGGTTGAAATCTCAATTGAGCTTCACAGGGCAGGAATCTCTTTCTCAGATATCAGAGGTGAGCGAAAATGTTGTTGATGGCATCAGTTCTGACAATGGTCACCATAGGGCTACACATTCTTATGCTACAACCAGCTTTGGAATGGACACCTGGGATAATTCAAACTCCATTGTGTTTTCTGCTCCCCCAAGTAAACGTGCAAAAACTATCGATGGAGACATTCTAAACTGTCTTAATGCCTTGGAATCCCAGTTCAGTCTGCCACAAACAACTCTGGAAATGGCAACAGTAGAGAAGCTACTTCAGATTCCTGAAGATTCTGTCCCTTGTAAAATTCGTGCTAAGAGAGGCTGTGCTACTCATCCAAGAAGCATTGCAGAACGGGAGAGAAGAACTAGAATAAGTGGGAAGCTGAAGAAGTTACAAGAGCTAGTGCCTAATATGGACAAGCAAACAAGCTACTCAGACATGCTAGATTTGGCTGTTCAACATATCAAAGGCCTACAAACTCAAGTTCAGAAGCTCCACAAAGAACTCGAGCATTGCACCTGTGGATGTAAACATAGTTCATAG 1032 0.4893 MYHSSSSSSSQKSISQSGLTRYGSAPGSLLTNAVDAVIGGADPEFSASAVGSRPPVVHFFSGDSSESTCKVNSSSDPKEQPPRPALQRSYGVHDGAAVGFVGSSSALLRQRSSPAGFLSHLTATQADNAGFSISRGSGSYSSQGVSNSGHGVSRLKSQLSFTGQESLSQISEVSENVVDGISSDNGHHRATHSYATTSFGMDTWDNSNSIVFSAPPSKRAKTIDGDILNCLNALESQFSLPQTTLEMATVEKLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYSDMLDLAVQHIKGLQTQVQKLHKELEHCTCGCKHSS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1895 343 MobiDBLite consensus disorder prediction 1 21 - -
Dere03g1895 343 CDD bHLH_AtbHLH_like 276 328 IPR045239 -
Dere03g1895 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 274 337 IPR036638 GO:0046983
Dere03g1895 343 Gene3D - 272 340 IPR036638 GO:0046983
Dere03g1895 343 MobiDBLite consensus disorder prediction 61 80 - -
Dere03g1895 343 FunFam Transcription factor bHLH130 family 272 340 - -
Dere03g1895 343 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 331 - -
Dere03g1895 343 Pfam Helix-loop-helix DNA-binding domain 276 322 IPR011598 GO:0046983
Dere03g1895 343 SMART finulus 277 327 IPR011598 GO:0046983
Dere03g1895 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 321 IPR011598 GO:0046983
Dere03g1895 343 MobiDBLite consensus disorder prediction 61 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1895 Dere-ChrDere03 30805280 30811563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1895 18 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 50.986 3.69e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere03g1895 HLH 9e-09 No_clan