Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1888 ATGTCTTCCGTTGTAGTTTCATGGATGACTACTACTTGTGCTGTACCATTTGAAGCTTCTTCTTCATCCAAGAACACTAACATCGTATCAGCTTGCCAGCAAACACCTTATAGAGCTGCCTGTGAAGAATCATTCGCCACATTCACACCCACCACTCCACCAAGTGACCTATTCGCTCACTCCCTTCAGTTCACCATAGACAAGGCCCTCTCTGCTCGAGCCTTAGCCTACAACCTTAGCCTTCTTTCCCATAGAGCAACATCCAATGAAACCCACATTAATATTCATGTTAATAATGTCGCCATTGTTGACTGTCTCGAGCTCCTCGACGACACTCTTGACCTCCTCTCTGGTACTGTCATCACCTCCAAACTTGAGCATCGTTATCACAGTACGAATATCCAAACATGGCTCAGTGCTGCTCTTACCAACCAAGAAACTTGCCTAGAGAGTCTTCAAAAGTACGAGTCTAAATCAGAGAAAGGCCTTATGGAGGTCGTGACACTAAAACTGAGTCACTTCATAACCAACTCGTTGTTTCTCTTCATGCATGACGAGACCAACAAGGAGAAGAGTGTACTACGTGGTAATGGTGGTAGCAGGAGACTGTTATCCGATGGCAGTGGTTCTGTTTTTCCGGAGTGGGTCTCCGTGTCGGAGAGGAAGCTTCTGGAAGCTTCTATGGAGGAGATTGGAGCAAGTGCCGTGGTGGCTAAAGATGGGAGTGGGACCCACAAGACCATAAGGGAAGCACTTGAGGAGGTGAAGATGATGGGTGGGGGAAGAAGTGTGATTCACGTAAAAGCAGGAACGTATAATGAGAATCTCAAGATTCCGACGAAACAGAAGAACGTTATGTTAGTAGGGGATGGGAAGGGCAAAACTGTCATTGTTGGAAACAGAAACTCCAAGGATGGCTGGACTACCTTCCAGTCTGCCACCGTTGGTAAGAGTCTAACTTGA 963 0.4663 MSSVVVSWMTTTCAVPFEASSSSKNTNIVSACQQTPYRAACEESFATFTPTTPPSDLFAHSLQFTIDKALSARALAYNLSLLSHRATSNETHINIHVNNVAIVDCLELLDDTLDLLSGTVITSKLEHRYHSTNIQTWLSAALTNQETCLESLQKYESKSEKGLMEVVTLKLSHFITNSLFLFMHDETNKEKSVLRGNGGSRRLLSDGSGSVFPEWVSVSERKLLEASMEEIGASAVVAKDGSGTHKTIREALEEVKMMGGGRSVIHVKAGTYNENLKIPTKQKNVMLVGDGKGKTVIVGNRNSKDGWTTFQSATVGKSLT 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1888 320 PANTHER PECTINESTERASE 11 316 - -
Dere03g1888 320 Pfam Pectinesterase 235 316 IPR000070 GO:0030599|GO:0042545
Dere03g1888 320 Gene3D - 228 318 IPR012334 -
Dere03g1888 320 Pfam Plant invertase/pectin methylesterase inhibitor 28 179 IPR006501 GO:0004857
Dere03g1888 320 NCBIfam pectinesterase inhibitor domain 2 182 IPR006501 GO:0004857
Dere03g1888 320 ProSitePatterns Pectinesterase signature 1. 259 278 IPR018040 -
Dere03g1888 320 CDD PMEI-like_3 30 182 - -
Dere03g1888 320 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 184 IPR035513 -
Dere03g1888 320 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 182 IPR035513 -
Dere03g1888 320 SMART PMEI_2 24 181 IPR006501 GO:0004857
Dere03g1888 320 SUPERFAMILY Pectin lyase-like 233 315 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1888 Dere-ChrDere03 30732516 30733478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1888 17 315 Carbohydrate Esterase AT3G59010 49.834 5.37e-76 240