Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1886 ATGGCGTTCCTTCCCCAACCCCAAGAAGCTGAAGAAGACACAAACGTCGACATTCACACCACCCGCGGAACTCCCATTCGGTATCTTCCTCTCGATCATCTTTATTCTGCTACATCCCCTTGCCGTGTCAGCGCGAGTGGTTCTTCCAACGTTATGTCGAAGAAGGTCAAGGCTCGCAAGCTCAATCTTACCCACTTAGAGGTCGATCCTGATGAGAAGAACTCACTTTCTAAGCCCCCTCTTGTTCATGTCTACTCGCGCCGACATAAGAGGCCTCGGCATTCCTCGGAGAGCTTGTCGTTTTTTGATTCTTTGGTGGGCCGGAGTGGGCCCACCGCGGATATTAGTAAAATTGATGATTCTGGGGAGCAGCGGGAGAACCGCAATTCTGAGGTTGGGAGGTCGAAGAAGAAGAGGAAAGCTGGGAACACTGAATTAGTGAATTTGGGGGTGGATTTGAGCGAATTGGGCAGTCTTGATGGGCCTCGGTTGAGGGATTGTCGTGATCATAATGTTACTGGTATTAGTAATTGTGACAGTAGTATGAAGAAAAAGCATGCCACTTCGGAAGATTTTCCAAAGCTATTGCCTGCATCGCGCACTGTAAAGAGATGGGTCAGGTTGACTTTTGATAATGCTGATCCTGGGACATTGGTTGGATTACGATGCAAGGTTTATTGGCCCATGGATTTGAAATGGTATGTTGGTCGTGTCATAGGTTATGATTCAGAAACTAAGATACATCATGTTAAATATGAAGATGGTGATGAGGAAAACTTGATTCTTTCAAATGAGAAAGTAAGATTCCACGTCTCCCGTGAGGAATTGAAGCAATTAAACTTGAGTAGTTGTAACATTTCTGATTATGACGCTGAAGAATTACTTGCCTTAGCTGCAAGTTTGGATAATTGTCAAGAGTTTGAGCCTGGGGAAGTTGTATGGGCCAAGCTAACAGGTCATGCAATGTGGCCGGCTCTTGTTATGGATGAATCACTTGCTGGCAACTGTAAGGGTTTAAAATTGTTTTCAGGAGGAAGATCTGTTCCTGTCCAATTTTTTGGCACTCATGACTTTGCAAGGGTTAGACTGCAGCAGGTGAAATCATTTCTCACTGGACTTCTTTCTCGTCTACACTTGAAGTGCAAGAAACCTCATTTTTTTGAAGGATTGGAAGAGGCTAAAATGTATTTAAGCAAACAGAAGGTTCCTTCTGAAATGCTACGATCACAGAAAAGATGTAAGGCTGATGACTGCAAAAATGTACATGGAGAGGATGAAGGATGTACAGATTCTGGCGATGATTGTCTAGATGACAGGTGGAGTCTGACAGCATTGGGAAACACTGAAATTTCTCCTTATGCAGTAGGAGATTTGAAAATTATAAGCCTTGGAAGAATTGTTCAAGACTCTGCAAATTTCCATGATGGAAGTGCAATCTGGCCAGAGGGTTACATGGCAGTGAGGAAGTTTACTTCAATTACTGGTGAAACACTTATGAAATATCCAAAAGTTTGTGCATCATATAAGATGGAGGTTTTGAGAGATCCAGAGTCAAAGGTTCGACCGCTATTTAGGGTGACACTGGATAGTGGAGAGCAGTTCAATGGTCCTACAGCATCTGCTTGCTGGAATAAAATATACAAAAGGATAAAGAAATTGGAAAAGGGTGTTTCTGAAGTTTCCATTGCAGATGGTGGGCTTGAAAGGGACTATAAATCTGGATCTGATATGTTTGGTTTCTCCAATCCTAAAGTAGCTAAACTTATACAGGGATTATCTAAGTGCAGTGCCACACCCAAAAACTTAATGTGCAAGATAGGTTCTGGAAGATGTAGTGATCTGCCTGTTGGTTATAGGCAGGTTCATATTGATTGGTTTGACCTTGACAAGTGCAATGTGTGTCACATGGATGAGGAATATGAGAACAATTTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGTTATGGAGAACTAGAACCTTCTAATGGAGTGCTATGGTTGTGCAACTTATGTCGGTCAGGCGCTCCCTCCCCCCCACCTTGCTGCTTGTGTCCACTCATAGGAGGTGCAATGAAGCCTACAACAGATGGGCGATGGGCTCATTTGGCATGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAAAATGGAGCCTATTGATGGGATAAGTAGAATCAGTAAGGACCGCTGGAAGTTATTATGTAGCATTTGTGGTGTGCCTTATGGTGCCTGCATCCAGTGTTCAAATAATTCTTGTCGAGTGGCATATCATCCACTTTGTGCACGTGCTGCAGGTCTCTGTGTTGAGCTTGAGAATGAGGACAGGCTTTATCTACTCTCTGTTGATGATGATGAAGATCAGTGCATTCGCTTACTTTCTTTCTGCAAGAAACATAGGCATCCATCAAATGATCATTCAGTTGCTGATGAACGCATTGGGCGAGTTGCCAGTCAATGTTCGGACTATAAACCCCCACCCAACCCATCTGGTTGTGCTCGCAGTGAGCCGTACAATAACATTGGTAGGAGAGGGCGGAAAGAACCTGAAGCACTTGCAGCTGCGTCCTTGAAACGCTTGTTTGTAGAGAATCAATCTTACTTAGTTGGTGGATATTGCCAGCATGGATTGTCAAACAATGCTGAGCCATCTGGAAGAGGAGTTTGCTCTAAATTCTTTTGTACCCAACAAAGGCTGAAGACCTCTCTGGTTGATGCTTCAAATGGCATACTTTCTATTGCTGAGAAATATAAGTACATGAGGGACACCTTTCGGAAGCGGCTAGCATTTGGGAAATCAAGAATCCATGGATTTGGCATCTTTGCAAAGCACCCATATAAAGGCGGGGACATGGTGATTGAATACACCGGTGAACTTGTTAGACCTCCCATAGCTGACCGGAGAGAGCATTTTATATATAATTCATTGGTGGGTGCTGGAACATACATGTTTCGGATTGATGATGAACGAGTCATTGATGCTACAAGAGCGGGAAGCATTGCTCATCTAATTAATCATTCCTGTGTACCAAATTGCTATTCAAGAGTTATCAGTGTTAATGGCGATGAGCATATTATAATATTTGCAAAGAGGGACATTAAACAATGGGAGGAGCTAACATATGATTATAGGTTTTTTTCAATTGATGAACGATTAGCTTGTTATTGTGGCTTCCCAAGATGCCGAGGTGTGGTAAATGATACTGAGGCAGAAGAGCGAGCTGCAAAGCTATATGTACCTCGAAGTGAATTAATAGATTGGAGGGGAGAATGA 3294 0.4323 MAFLPQPQEAEEDTNVDIHTTRGTPIRYLPLDHLYSATSPCRVSASGSSNVMSKKVKARKLNLTHLEVDPDEKNSLSKPPLVHVYSRRHKRPRHSSESLSFFDSLVGRSGPTADISKIDDSGEQRENRNSEVGRSKKKRKAGNTELVNLGVDLSELGSLDGPRLRDCRDHNVTGISNCDSSMKKKHATSEDFPKLLPASRTVKRWVRLTFDNADPGTLVGLRCKVYWPMDLKWYVGRVIGYDSETKIHHVKYEDGDEENLILSNEKVRFHVSREELKQLNLSSCNISDYDAEELLALAASLDNCQEFEPGEVVWAKLTGHAMWPALVMDESLAGNCKGLKLFSGGRSVPVQFFGTHDFARVRLQQVKSFLTGLLSRLHLKCKKPHFFEGLEEAKMYLSKQKVPSEMLRSQKRCKADDCKNVHGEDEGCTDSGDDCLDDRWSLTALGNTEISPYAVGDLKIISLGRIVQDSANFHDGSAIWPEGYMAVRKFTSITGETLMKYPKVCASYKMEVLRDPESKVRPLFRVTLDSGEQFNGPTASACWNKIYKRIKKLEKGVSEVSIADGGLERDYKSGSDMFGFSNPKVAKLIQGLSKCSATPKNLMCKIGSGRCSDLPVGYRQVHIDWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPSNGVLWLCNLCRSGAPSPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKKMEPIDGISRISKDRWKLLCSICGVPYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRHPSNDHSVADERIGRVASQCSDYKPPPNPSGCARSEPYNNIGRRGRKEPEALAAASLKRLFVENQSYLVGGYCQHGLSNNAEPSGRGVCSKFFCTQQRLKTSLVDASNGILSIAEKYKYMRDTFRKRLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCVPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPRCRGVVNDTEAEERAAKLYVPRSELIDWRGE 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1886 1097 CDD Tudor_Agenet_AtEML-like 219 269 - -
Dere03g1886 1097 CDD ePHD_ATX1_2_like 692 806 IPR041956 -
Dere03g1886 1097 Pfam PHD-zinc-finger like domain 685 806 - -
Dere03g1886 1097 CDD PHD_ATX1_2_like 630 676 IPR042010 -
Dere03g1886 1097 SUPERFAMILY FYVE/PHD zinc finger 621 694 IPR011011 -
Dere03g1886 1097 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 678 809 IPR013083 -
Dere03g1886 1097 SMART set_7 933 1057 IPR001214 GO:0005515
Dere03g1886 1097 Gene3D - 217 268 - -
Dere03g1886 1097 Pfam SET domain 944 1050 IPR001214 GO:0005515
Dere03g1886 1097 SMART fyrn_3 465 515 IPR003888 GO:0005634
Dere03g1886 1097 ProSiteProfiles Zinc finger PHD-type profile. 628 679 IPR019787 -
Dere03g1886 1097 Pfam F/Y-rich N-terminus 456 494 IPR003888 GO:0005634
Dere03g1886 1097 SUPERFAMILY Tudor/PWWP/MBT 303 404 - -
Dere03g1886 1097 Gene3D - 451 597 - -
Dere03g1886 1097 MobiDBLite consensus disorder prediction 69 98 - -
Dere03g1886 1097 SUPERFAMILY SET domain 929 1070 IPR046341 -
Dere03g1886 1097 Gene3D SET domain 879 1086 IPR046341 -
Dere03g1886 1097 PANTHER PHD FINGER PROTEINS 42 1087 - -
Dere03g1886 1097 ProSitePatterns Zinc finger PHD-type signature. 631 676 IPR019786 -
Dere03g1886 1097 ProSiteProfiles PWWP domain profile. 309 372 IPR000313 -
Dere03g1886 1097 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 677 IPR013083 -
Dere03g1886 1097 ProSiteProfiles FYR domain FYRN motif profile. 450 515 IPR003888 GO:0005634
Dere03g1886 1097 SMART TUDOR_7 215 273 IPR002999 -
Dere03g1886 1097 SMART PWWP_4 307 371 IPR000313 -
Dere03g1886 1097 CDD PWWP_AtATX1-like 308 403 - -
Dere03g1886 1097 ProSiteProfiles FYR domain FYRC motif profile. 519 605 IPR003889 GO:0005634
Dere03g1886 1097 Pfam PHD-finger 643 677 - -
Dere03g1886 1097 CDD SET_SETD1-like 921 1069 - -
Dere03g1886 1097 ProSiteProfiles SET domain profile. 933 1051 IPR001214 GO:0005515
Dere03g1886 1097 SUPERFAMILY Tudor/PWWP/MBT 217 260 - -
Dere03g1886 1097 ProSiteProfiles Post-SET domain profile. 1057 1073 IPR003616 -
Dere03g1886 1097 FunFam Histone-lysine N-methyltransferase 866 1090 - -
Dere03g1886 1097 SMART PHD_3 741 807 IPR001965 -
Dere03g1886 1097 SMART PHD_3 630 677 IPR001965 -
Dere03g1886 1097 MobiDBLite consensus disorder prediction 1 21 - -
Dere03g1886 1097 FunFam Histone-lysine N-methyltransferase 681 809 - -
Dere03g1886 1097 MobiDBLite consensus disorder prediction 118 143 - -
Dere03g1886 1097 ProSiteProfiles Extended PHD (ePHD) domain profile. 683 807 IPR034732 -
Dere03g1886 1097 Gene3D - 298 409 - -
Dere03g1886 1097 Pfam F/Y rich C-terminus 521 594 IPR003889 GO:0005634
Dere03g1886 1097 SMART fyrc_3 523 603 IPR003889 GO:0005634
Dere03g1886 1097 MobiDBLite consensus disorder prediction 112 143 - -
Dere03g1886 1097 Pfam PWWP domain 310 397 IPR000313 -
Dere03g1886 1097 SUPERFAMILY FYVE/PHD zinc finger 732 771 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1886 Dere-ChrDere03 30714669 30726999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1886 631 777 C2H2 Transcription Factor Family AT3G14740 39.735 3.10e-26 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere03g1886 zf-HC5HC2H_2 2.4e-33 CL0390