Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1873 ATGCGGGGCACATACAGCAGATTCTTCTGCTTTGACAGCTCGCATCCTGCGACACTGCAAAGCATGGCGAACCCTACGGCTAGGTCCTTCCTGCAAGTGGCGGCAACGGAGGAGGCTGCACCCCCTCTAAGAGTGATCCAGATGGAGGGACTGGTTATCTTAAAGATAATTAAACATTGTAAGGACCATTCACCTACTTTAGTCACCGGACAACTTCTTGGGCTGGATGTTGGCAGTGTTCTCGAAGTTACTAACTGTTTCCCCTTTCCGATAAGAGAGGAGGATGAGGAAATTGAGGCTGATGGTGCTAATTACCAGCTCGAAATGATGAGATGCTTGAGGGAGGTTAATGTTGACAATAATACCGTTGGATGGTACCAGTCTACATTGCTTGGTTCCTTTCAGACTGTGGAGCTGATTGAAACTTTCATGAATTACCAGGAGAACATTAGACGATGTGTTTGCATAATATATGATCCATCAAGGTCTGATCAAGGTGTCCTAGCTCTGAAGGCCTTGAAGCTCTCTGACTCTTTCATGGAACTCTATCGCAGCAACAACATTACAGGAGAGAAACTGAGGGAGAAAAACTTGTCCTGGGTGGATATCTTCGAGGAGATACCTATCAAAGTTTCAAATTCTGCCCTTATCAGTGCCTTTATGACTGAGCTGGAACCTGATACACCAGTAACCCAGTGTGATTATGATCGTCTCCAACTCTCAACTAGTTCATTGATGGAGAGGAATATGGAGTTTTTGATTGAATGCATGGATGATTTGTCAATGGAACAGCAGAAGTTCCAATTTTACTACCGGAGCTTGTCCCGCCAGCAGGCCCAACAGCAAGCATGGCTTCAGAAGAGAAGGGCGGAGAACATGGCACGTAAAGCTGCTGGCGAGGACCCCTTACCCGAGGAAGATCCATCAAACCCCATTTTCAAGCCACTCCCTGAGCCATCACGTTTGGACAGCTTCCTGATAACAAATCAAATTGCCAACTACTGCAACCAAATTAATGGGGTATCAGGGCAGAGCTTTAACAGACTCTATCTGATGAAGGCTTTGCTTGAAGATTGA 1077 0.4605 MRGTYSRFFCFDSSHPATLQSMANPTARSFLQVAATEEAAPPLRVIQMEGLVILKIIKHCKDHSPTLVTGQLLGLDVGSVLEVTNCFPFPIREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYRSNNITGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLMERNMEFLIECMDDLSMEQQKFQFYYRSLSRQQAQQQAWLQKRRAENMARKAAGEDPLPEEDPSNPIFKPLPEPSRLDSFLITNQIANYCNQINGVSGQSFNRLYLMKALLED 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1873 358 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 37 342 - -
Dere03g1873 358 CDD MPN_eIF3h 44 307 IPR027524 GO:0003743|GO:0005737|GO:0005852
Dere03g1873 358 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 45 147 IPR000555 GO:0005515|GO:0008233|GO:0008237
Dere03g1873 358 SMART pad1_6 45 178 IPR000555 GO:0005515|GO:0008233|GO:0008237
Dere03g1873 358 MobiDBLite consensus disorder prediction 290 315 - -
Dere03g1873 358 Pfam C-terminal region of eIF3h 165 355 IPR045810 -
Dere03g1873 358 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 41 358 IPR027524 GO:0003743|GO:0005737|GO:0005852
Dere03g1873 358 Gene3D Cytidine Deaminase, domain 2 12 234 - -
Dere03g1873 358 FunFam Eukaryotic translation initiation factor 3 subunit H 25 234 - -
Dere03g1873 358 ProSiteProfiles MPN domain profile. 46 179 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1873 Dere-ChrDere03 30562438 30567927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1873 109 358 Eukaryotic Initiation Factors Gene Family AT1G10840 83.200 1.22e-154 433