Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1860 ATGGCTCCTCCCAAAGTTCTTATGGTAGCAGAGAAGCCTAGCATCGCTCTCTCTATTGCCTCTGTTCTCTCCCGCGGGCAGATGTCTACAAGAAAAGGAAGCACAGAAGTTCATGAATTTGAGGGGATATTTCTTGGATCTCATGCACACTTCAAAGTAACATCAGTTATTGGGCATATATTTAGTGTAGATTTTCCTGCAAAATATCAGGATTGGACGGCCACAGATCCCCTAGATCTTTTTCAAGCTCCGGTTATAAAGAATGAATCAAACCCAAAGGCACATATATGTAGACACCTAAATCAAGAAGCACGTGGATGTCGATACTTGGTATTGTGGTTAGACTGTGATCGTGAAGGAGAAAATATATGCTTTGAAGTTATAGAGTCAACTAGCTTCAATGTAAATGAAGCTCGAAAGAGGATTTTTCGTGCACGCTTTTCTTCTGTCACTGAGAAGGATATTCTGAAGGCTCTGGACAACCTTGTGGAACCCAACAAAAATGAGGCACTGGCTGTGGATGCTAGGCAGGAGATAGATTTAAAAGTTGGAGTTGCCTTCACTCGATTTCAGACAAGTTATTTCCAGGGAAAATACGGAAACCTTGATGCCAGAGTTATATCCTATGGACCATGTCAAACTCCTACCTTAGGCTTTTGTGTACAGCGGTATTTGCAAATGAATACATTCAAGCCAGAAAAGTTTTGGACCTTGCATCCTTACATAATACACAATGGCTATGAGATTCAGCTAGAATGGGACCGTGGCAGATTATTTGACATAAATGTTGCTGTTATGTTTGAAAAGCTAATAACTGAAGCTGGACTTTTGGAAGTTTCTGATATATCGGAAGAACAGAAAACCAAAAGTCGCCCTGTTGGTCTAAACACAGTCAATCTCCTGAAGGTTGCTTCAAGTGCTTTAGGATTTGGGCCTCAGATGGCTATGCAACTAGCTGAGCGATTGTATACTCAAGGTTTTATCAGCTATCCACGCACAGAAAGTACAGCATACCCGCCTTCATTTGACTTTCAGGGTGTACTCTCTGCACAAGCAAATAATCCAACTTGGGGTCATTATGTACAGGGGTTACTCACTGATGGTTATCGCAAGCCTCGATTAGGAACAGATGTGGGTGACCATCCTCCTATCACTCCAATGCGGTCAGCATCTGAGGATATGGTAGGCAATGATGCTTGGAAGTTGTACCAATATGTCTGCCAACACTTCCTGGGGACGGTGTCCCCAGATTGCGAGTATATAAGGAGAAAGGTAGAATTTTCAATTGGTGGAGAGTCCTTTCATTGTACGGGGAAGCATGTTACCCTAAAAGGATTTACTTCTATAATGCCTTGGTTGGCAGTAAATGACAAAAATATTCCATCCTTCACAAAAGGGCAGGAAATTGATATGTCAAAAATGGAGCTATACGAGGGGACTACTTCACCTCCAGATTATCTTACTGAAAGTGAGCTGATTTCCCTGATGGAGAAGAATGGGATAGGAACAGATGCATCAATTCCTGTACATATCAACAACATCTGTGAGCGGAATTATGTGCAGGTACAAGCAGGCAGGAAGCTTGTCCCAACTCCGTTGGGTGTAAGTTTAGTAAGAGGTTATCAATTGATTGATCCAGACCTCTGCCTACCTGATATACGTAGCTTCATTGAGCAGCAAATTACTCTTGTTGCTAGGGGTCAGGTTGATCATTTTCGTGTTGTGCAGCATGTACTACAACAATTCAAGCAGAAGTTTAGTTACTTTGTTAAGAAGATTGAAAATATGGATGCATTATTTGAGGCCCAATTTTCTGCCCTTACTGATTCAGGGCGTACACTTAGTAAATGTGGTAAATGCTTGCGATATATGAAGTACATTTCTTCTCAGCCACCACGATTGTATTGCAATACATGTGAGGAGGTTTACTATCTTCCACAAAAGGGAACAATCAAGTTGTACAAGGAACTGGCTTGTCCTTTGGACAACTTTGAGCTTTTGATCTGCTCCATGCCTGGCCCAGAGGGTAAATCATTCCCACTCTGCCCATACTGCTACAGCAATCCCCCGTTTGAAGGTATCGAAACACTCATCAACACAGCTAAAATTGGTGCTTCTGGCAAGCTAGGGAAGGGAGCTGGTATGCCATGCATCCTCTGCCCCCATCCTACTTGCCCAAATTCTATGGTTTTGCAAGGGGTCTGTGCTTGCCCTGAGTGCAGTGGGACGCTTGTCTTAGACCCAGTAAGTGCTCCCAAGTGGCGGCTTTACTGCAACATGTGCAATTGCCTTGTTCTTCTTCCTGAAGGTGCTCACAGAATCTCCACAACTCGAGAACAGTGCCACGAATGTGACTCTACAATCATAGAAGTGGACTTCAACAAGAAAACAACTCCTCTGGAAGATGGAGCTACCTTGCACCGGGGTTGTGTTCTTTGTGACGAGTTGCTGCATTCCCTTGTGGAGTTGAAACATGGGAAGAGTTTCAGTTCAAGAGGAAGGGGAAGGGGAAGAGGAAGAGGAAGGGGAGGCGGATATAGAGGTAGAGGTCGTGGCAGTGGAAAATTGATTGATCCAAAAATGAGTTTCCGGGATTTTTAA 2601 0.4344 MAPPKVLMVAEKPSIALSIASVLSRGQMSTRKGSTEVHEFEGIFLGSHAHFKVTSVIGHIFSVDFPAKYQDWTATDPLDLFQAPVIKNESNPKAHICRHLNQEARGCRYLVLWLDCDREGENICFEVIESTSFNVNEARKRIFRARFSSVTEKDILKALDNLVEPNKNEALAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDARVISYGPCQTPTLGFCVQRYLQMNTFKPEKFWTLHPYIIHNGYEIQLEWDRGRLFDINVAVMFEKLITEAGLLEVSDISEEQKTKSRPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPPSFDFQGVLSAQANNPTWGHYVQGLLTDGYRKPRLGTDVGDHPPITPMRSASEDMVGNDAWKLYQYVCQHFLGTVSPDCEYIRRKVEFSIGGESFHCTGKHVTLKGFTSIMPWLAVNDKNIPSFTKGQEIDMSKMELYEGTTSPPDYLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTPLGVSLVRGYQLIDPDLCLPDIRSFIEQQITLVARGQVDHFRVVQHVLQQFKQKFSYFVKKIENMDALFEAQFSALTDSGRTLSKCGKCLRYMKYISSQPPRLYCNTCEEVYYLPQKGTIKLYKELACPLDNFELLICSMPGPEGKSFPLCPYCYSNPPFEGIETLINTAKIGASGKLGKGAGMPCILCPHPTCPNSMVLQGVCACPECSGTLVLDPVSAPKWRLYCNMCNCLVLLPEGAHRISTTREQCHECDSTIIEVDFNKKTTPLEDGATLHRGCVLCDELLHSLVELKHGKSFSSRGRGRGRGRGRGGGYRGRGRGSGKLIDPKMSFRDF 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1860 866 Gene3D Topoisomerase I, domain 4 291 416 IPR013826 -
Dere03g1860 866 MobiDBLite consensus disorder prediction 828 866 - -
Dere03g1860 866 SUPERFAMILY Prokaryotic type I DNA topoisomerase 5 626 IPR023405 -
Dere03g1860 866 CDD TOP1Ac 168 586 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dere03g1860 866 SMART topIaneu2 283 538 IPR003602 GO:0003677|GO:0003916|GO:0006265
Dere03g1860 866 FunFam DNA topoisomerase 3 165 - -
Dere03g1860 866 CDD TOPRIM_TopoIA_TopoIII 5 162 IPR034144 -
Dere03g1860 866 ProSiteProfiles Toprim domain profile. 5 148 IPR006171 -
Dere03g1860 866 Pfam DNA topoisomerase 165 575 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dere03g1860 866 PRINTS Prokaryotic DNA topoisomerase I signature 325 334 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dere03g1860 866 PRINTS Prokaryotic DNA topoisomerase I signature 500 514 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dere03g1860 866 PRINTS Prokaryotic DNA topoisomerase I signature 402 418 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dere03g1860 866 PRINTS Prokaryotic DNA topoisomerase I signature 110 123 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dere03g1860 866 PRINTS Prokaryotic DNA topoisomerase I signature 207 225 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dere03g1860 866 FunFam DNA topoisomerase 291 416 - -
Dere03g1860 866 Gene3D - 2 165 - -
Dere03g1860 866 PANTHER PROKARYOTIC DNA TOPOISOMERASE 5 822 IPR000380 GO:0003677|GO:0003917|GO:0006265
Dere03g1860 866 SMART toprim5 5 136 IPR006171 -
Dere03g1860 866 Gene3D Topoisomerase I, domain 3 231 484 IPR013825 -
Dere03g1860 866 Pfam Toprim domain 6 149 IPR006171 -
Dere03g1860 866 SMART topIban2 141 237 IPR003601 GO:0003677|GO:0003916|GO:0006265
Dere03g1860 866 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 320 334 IPR023406 GO:0003917
Dere03g1860 866 Gene3D Topoisomerase I, domain 2 172 586 IPR013824 -
Dere03g1860 866 MobiDBLite consensus disorder prediction 830 845 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1860 Dere-ChrDere03 30424857 30450362 Dispersed