Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1855 ATGGTTACTATCCTCAAATTTCGAAGCATCTTCTTCGCAGTACAGGCCACAAGTACACCAAGATTAGGCCCATGTGCTGCATTTAGATATTGTCATTTAAAGTCAGAAGGGGGTCGCAGTGATCTGGATAATAATTTGAAATTATCAGCAACAAGCTTGCGAAGTAGAGTTGGAATTTTTTGGGATTTAGACAACAAACCACCCAAGTCATTACCACCTTATGAAGCTGCCACTAAGCTGAAAGCAGCTGCATCTTACTTTGGTGTTGTTAGGCATATGGTGGCTTATGCGAATCGTCATACTTTTAGCCATGTCCCACAAGATGTTCAGGAACAAAGAAAAGAGAGGAGGTTGTTGAATCATTTAGAGAACAAGGGTGTGATCAAGCCAGCAGAACCTTATCTTTGTCGGGTTTGCGGGAGAAAATTTTATACGAATGAGAAACTTGTTAATCATTTTAAGCAAATTCACGAGCGTGAGCATATGAAAAGAGTGAACATGATTGAATCAGCAAAGGGGAATAGGAGGGTGAAGTTGGTTGCCAAGTATTCGATGAAAATGGAGAAGTATAAGAATGCTGCAAGGGGCATTTTGACTCCCAAAGTGGGATATGGTTTGGCAGATGAGCTAAAACGTGCAGGGTTTTGGGTTCGGACTGTGTTGGATAGGCCGCAAGCTGCAGATCTTGCATTGAAATGTCACATGGTGGATATGATGGATAATAACCGGGTTGAGTGTGTGGTTCTTGTATCAGATGATTCTGATTTTGCCAATGTATTGAAGGAGGCAAAGTTACGATGTCTCAAGACTGTTGTCATTGGGGATACCAACAACGGAACCTTGAAGAGGACTGCTGATGCTGCCTTTTCTTGGGAGGAAATTCTGATGGGGAAGGCGAAGAAGGAGGCAGTATCAGTTGTGGAAAAGTGGAAGGATCGTGATATTTTAAAAAGATTAGAGTGGACATACAATCCAGAGGTGGAGAAAAAGAAATACAGTCTGGATGATATGGTTACCGAGGCAACTGAGGATGAGGACATCAAAGATATCTGTGATGAAGTTGACGGTGCCTATAAGGAAGACTCAAATGCTTGGTGGGCATTGGATACTGATGATAAGTTCATAAGTGAACAGTCAGGATACTGA 1146 0.4206 MVTILKFRSIFFAVQATSTPRLGPCAAFRYCHLKSEGGRSDLDNNLKLSATSLRSRVGIFWDLDNKPPKSLPPYEAATKLKAAASYFGVVRHMVAYANRHTFSHVPQDVQEQRKERRLLNHLENKGVIKPAEPYLCRVCGRKFYTNEKLVNHFKQIHEREHMKRVNMIESAKGNRRVKLVAKYSMKMEKYKNAARGILTPKVGYGLADELKRAGFWVRTVLDRPQAADLALKCHMVDMMDNNRVECVVLVSDDSDFANVLKEAKLRCLKTVVIGDTNNGTLKRTADAAFSWEEILMGKAKKEAVSVVEKWKDRDILKRLEWTYNPEVEKKKYSLDDMVTEATEDEDIKDICDEVDGAYKEDSNAWWALDTDDKFISEQSGY 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1855 381 Gene3D - 49 296 - -
Dere03g1855 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 162 IPR013087 -
Dere03g1855 381 SUPERFAMILY beta-beta-alpha zinc fingers 131 160 IPR036236 -
Dere03g1855 381 ProSitePatterns Zinc finger C2H2 type domain signature. 136 157 IPR013087 -
Dere03g1855 381 CDD PIN_LabA-like 144 275 - -
Dere03g1855 381 Pfam NYN domain 207 287 IPR021139 GO:0004540
Dere03g1855 381 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 51 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1855 Dere-ChrDere03 30392023 30393168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1855 56 379 C2H2 Transcription Factor Family AT4G12240 62.874 6.18e-152 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere03g1855 NYN 3.4e-08 CL0280