Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1853 ATGAACCTTGCAAGAAGAGTTTTAACGAATGAAAGCTTTACTGCAAGCCTTTCAAATGTCCTAAACAACCGCTCTAGAATAGATGCAGAAATATTCTGCACCATGACTTGCAAGATATGGGCTCCACGAAACCATGCCCATTGGAGAGGAACTAATCAAAGCAAGAGATTAGTGTATGGTGAAACTATATTCTACTTAGAGGAATGGAAACTAGCAAATTCGAAAGCTGGGGTCATCAAGAACAACTCCGAGAGTGAAGAAACTATACTAGAGCAACACGCCTCGGAGCACCAGATAAGGGGGCGATTCAGAGCTCGGCCCTATTATTCAAGAGTGCAAGGACGTTTGCAACTGGCAGTGACTTTAGGTGCTCTTGGGTTAGGGGGAATAATAATCAGGAAGCTAACAAAATCCGTGATGGATGACGATTTTGAGTTCCCAACTACGAACGATATGGGCAACGAAGACGAAGATATGGGAAATCCGGAGGACGACCCTGTTAGCCCAATTCTCAAGGTTGGGGAAGAGAAGGAGATTGGAAAGAATGGCCTCAAGAAGAAGTTGGTTAAGGAAGGAGAAGGATGGGAGACCCCGAAGGCTGGAGACGAAGTTGAAGTTCATTACACCGGGACATTGCTTGATGGAACCCAGTTCGATTCTAGCCGTGACAGGGGAACCCCTTTTAAGTTCAAACTTGGGCAAGGCCACGTAATAAAAGGATGGGACGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCCATTTTCACTATACCCCCAGAGTTGGCCTACGGAGAGTCTGGATCTCCTCCGACTATTCCTCCGAAATCAACCTTACAATTTGACGTGGAGTTGCTGTCTTGGACTAGTGTGAAGGACATAAGCAAGGATGGGGGTTTATTAAAAAAAGTTATCTCTGAAGGAGAGAGCTGGGAAAATCCAAAGGATCTGGATGAAGTTTTTGTTAAGTATGAAGCTAGGCTTGATGATGGGACACTCATTTCGAAGTCTGATGGGGTGGAATTCACCGTTGAAGATGGCTACTTCTGTCCTGCGTTGGCTAAGGCTGTGAAAACAATGAAGAAAGGAGAGAAAAGCCTCTTGACCGTGAAGCCACAATATGCATTTGGCGAGAATGGAAGGCCGGCAACTGGGGACGAAGATGCTGTACCTCCTAATGCTTCACTCCAGATTAATCTCGAATTGGTCTTTTGGAAGAGTGTGTCTGACATTACCAAGGACAAGAAAGTTCTCAAAAAGACTTTGAAGGAGGGTGAGAAATATGAACGACCAAATGATGGATCTGTGGTTCAAGTGAAACTTATTGGCAAGCTGCAAGATGGGACTGTTTTCACTAAGAAGGGCCATGATGACGAGCAGCCATTTGAGTTCAAAATCGATGAAGAGCAAGTAATTGTGGGACTCGATAGAGCTGTGAAGAACATGAAGAAAGGGGAAATTGCACTGGTGACCATACAACCTGAATATGCTTTTGGTGCCTCTGGGTCACCCCAAGAATTGGCTACTGTTCCTCCCAATTCAACTGTATATTACGAAGTTGAGCTGCTTTCCTTTGAGAAGGAAAAGGAGTCATGGGAATTGAACACACCGGATAAGATTGAGGCAGCTGGAAAGAAAAAGGAAGAAGGGAATGCATATTTTAGGGCTGGTAAATATGATAGAGCATCAAAACGATATAAAAAGGCCATGAGGTATATTGAGTACGACTCCAACTTCAGTGATGAGGAGAAGCAGCAGACCAAGGTACTGAAAATCTCATGCAACCTTAATAATGCTGCCTGTATGTTGAAGCTTAAAGACTACAAGGAAGCAGCAAAGTTGTGCACAAAGGTATTAGAACTTGATAGTGGGAATGTTAAAGCTCTGTACCGAAGGGCACAAGCATATATGCAACTTGTGGATTTGGATCTTGCTGAAATGGACATAAAGAAAGCCCTTGAAATTGAGCCAGACAATAGGGACTTGAAAGTGGAGTACAAAATTCTGAAGGATAAAGTGAGAGAATACAACAAAAAGGATGCACAGTTCTATGGCAATATATTTGCGAAAATGAACAAGCTTGAACAAGCTAGAACAGCAAATGCAGCAGCAAAACAGGAGCACGTGCCAGTGACTATTGATAGTAAAGCATGA 2154 0.4341 MNLARRVLTNESFTASLSNVLNNRSRIDAEIFCTMTCKIWAPRNHAHWRGTNQSKRLVYGETIFYLEEWKLANSKAGVIKNNSESEETILEQHASEHQIRGRFRARPYYSRVQGRLQLAVTLGALGLGGIIIRKLTKSVMDDDFEFPTTNDMGNEDEDMGNPEDDPVSPILKVGEEKEIGKNGLKKKLVKEGEGWETPKAGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFKLGQGHVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPKSTLQFDVELLSWTSVKDISKDGGLLKKVISEGESWENPKDLDEVFVKYEARLDDGTLISKSDGVEFTVEDGYFCPALAKAVKTMKKGEKSLLTVKPQYAFGENGRPATGDEDAVPPNASLQINLELVFWKSVSDITKDKKVLKKTLKEGEKYERPNDGSVVQVKLIGKLQDGTVFTKKGHDDEQPFEFKIDEEQVIVGLDRAVKNMKKGEIALVTIQPEYAFGASGSPQELATVPPNSTVYYEVELLSFEKEKESWELNTPDKIEAAGKKKEEGNAYFRAGKYDRASKRYKKAMRYIEYDSNFSDEEKQQTKVLKISCNLNNAACMLKLKDYKEAAKLCTKVLELDSGNVKALYRRAQAYMQLVDLDLAEMDIKKALEIEPDNRDLKVEYKILKDKVREYNKKDAQFYGNIFAKMNKLEQARTANAAAKQEHVPVTIDSKA 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1853 717 ProSiteProfiles TPR repeat profile. 543 576 IPR019734 GO:0005515
Dere03g1853 717 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 296 409 - -
Dere03g1853 717 Pfam Tetratricopeptide repeat 626 659 IPR001440 GO:0005515
Dere03g1853 717 SUPERFAMILY TPR-like 541 692 IPR011990 GO:0005515
Dere03g1853 717 SMART tpr_5 626 659 IPR019734 GO:0005515
Dere03g1853 717 SMART tpr_5 592 625 IPR019734 GO:0005515
Dere03g1853 717 SMART tpr_5 543 576 IPR019734 GO:0005515
Dere03g1853 717 ProSiteProfiles TPR repeat profile. 626 659 IPR019734 GO:0005515
Dere03g1853 717 FunFam Peptidylprolyl isomerase 174 292 - -
Dere03g1853 717 FunFam Peptidylprolyl isomerase 293 406 - -
Dere03g1853 717 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 312 403 IPR001179 GO:0003755
Dere03g1853 717 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 429 523 IPR001179 GO:0003755
Dere03g1853 717 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 195 286 IPR001179 GO:0003755
Dere03g1853 717 SUPERFAMILY FKBP-like 175 293 - -
Dere03g1853 717 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 201 289 IPR001179 GO:0003755
Dere03g1853 717 FunFam Peptidylprolyl isomerase 407 528 - -
Dere03g1853 717 Gene3D - 293 406 IPR046357 GO:0003755
Dere03g1853 717 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 317 406 IPR001179 GO:0003755
Dere03g1853 717 SUPERFAMILY FKBP-like 407 542 - -
Dere03g1853 717 Coils Coil 659 679 - -
Dere03g1853 717 Gene3D - 407 527 IPR046357 GO:0003755
Dere03g1853 717 SUPERFAMILY FKBP-like 293 407 - -
Dere03g1853 717 Gene3D Tetratricopeptide repeat domain 529 686 IPR011990 GO:0005515
Dere03g1853 717 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 434 526 IPR001179 GO:0003755
Dere03g1853 717 Gene3D - 177 292 IPR046357 GO:0003755
Dere03g1853 717 FunFam Peptidylprolyl isomerase 531 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1853 Dere-ChrDere03 30356084 30362154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1853 162 717 Calmodulin-binding Proteins AT5G48570 72.193 0.0 828