Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere03g1851 | ATGTCGGAATTGGCGAGCACAGATCCCGAAGGTGTCGATGCAGTCCGCATGACTTGGAACGCGTGGCCACGCACCAAGGTCGAAGCTAGCAAGTGCGTCATCCCACTTGCTGCCACCATCTCCTTGATCCGTCCTCACCCTGACATTCCACGCCTCCCTTATGCCCCTCTCCGCTGCAAGACCTGCTCCTCCGTTCTCAACCCCTTCTCTCGCGTCGATTTCACTGCTAAGATCTGGATCTGCCCCTTTTGCTATCAGCGCAATCATTTCCCCCCTCATTATAGCGCGATCTCTGAGACCAATGTCCCCGGGGAGCTCTACCCTCAGTACACCACTGTTGAATATGCTCTTCCTCTCTCCACGAATCCCAATTCATTGGGAAACCCGAATCTCGATCCGGCCCATCAATTGCAGCCTTGCCCTGTTTTTGTTTTTGTGCTTGATACGTGCATGATCGAGGAAGAGATGGAGTATGTGAAATCCGCACTTAGACAGGCGATCGGGCTGCTACCTGACAATGCTCTCGTGGGTTTCGTTTCTTTTGGTACCCAGGTTCAAGTTCATGAATTGGGGTTCTCTGATATGTCCAAGGTTTATGTGTTCCGGGGTAGTAAGGAGATTCCGAAAGAACAAATTTTGGAGCAACTGGGTCTGGGTGCATCTGGGCGGAGACAGGCCGGTGGATATCAAAAGGGGATGCAGGGTGGATTCCCCAGTTCAGGTGTCACGCGGTTTTTACTGCCTGCATCCGATTGTGAATACACTCTTAATTCGCTACTGGATGAATTGCAAACCGATCAATGGCCTGTTCCACCGGGCAGTCGTCCAGCACGGTGCACTGGAGTGGCGTTAAGTGTTGCAGCGGGATTGCTTGGTGCTTGTGTTCCTGGTACTGGGGCAAGAATCATAGCTTTGGTCGGTGGTCCATGCACAGAAGGACCAGGCTCGATCGTGTCCAAAGATCTATCTGACCCAGTGCGTTCTCATAAAGATCTTGATAAAGACGCAGCGCCTTACTTCAAGAAAGCTGTCAAATTTTATGAGGGTCTTGCAAAACAGCTGGTTAGCCAGGGTCATGTTTTAGATCTTTTTGCATCAGCACTTGATCAGGTTGGAGTTGCAGAAATAAAAGTTGCAGTCGAAAGAACAGGTGGCCTTGTTGTTCTGGCTGAAAGTTTTGGTCATTCAGTATTCAAGGACTCTTTTAAGCGTGTTTTTGAGGACGGGGAGCAATCACTTGGTCTTTGTTTTAATGGAACCCTGGAGATCAATTGCTCCAAGGAAATAAAAATTCAAGGAATTATTGGACCTTGCACATCATTGGAAAAGAAAGGGCCGGCTGTTGCTGATACTGTGATAGGAGAGGGGAATACAACAGCATGGAAGATGTGTGGCCTTGACAAGAGTACATGCATGACAGTGATGTTTGATCTTTCATCAAGTGATCGTTCAAACAATCCAGGAACTGTCAACCCCCAGTTTTACCTACAGTTCCTTACAAGTTACCAGGGCCCTGATGGTCAACTAGTGCTTCGTGTTACAACAGTAACTAGAAGATGGGTAGATAATGCTGTTAGCTCAGAGGAACTGGTACAAGGATTTGATCAAGAAACAGCTGCAGTGGTAATGGCTAGATACGCTTCTTTGAAAATGGAGACAGAGGAAGGATTTGATGCCACACGGTGGTTAGATCGGTACCTCATTCGACTCTGTTCTAAATTCGGAGACTATCGCAAGGATGATCCATCTTCATTTACATTAAACCCATCATTTTCATTGTTCCCTCAGTTTATGTTCAATCTGCGACGGTCACAGTTTGTACAGGTTTTTAACAATAGTCCTGATGAGACTGCCTACTTCCGCATGTTGCTAAACAGGGAAAATATTAGTAATGCTGCTGTCATGATTCAACCATCTTTAATATCATATTCTTTCAATTCACTGCCTGCACCAGCATTGTTGGATGTGTCTTCCATTGCTGCTGACCGAATTCTCTTGCTAGACTCATATTTTAGTGTTGTCATTTTTCATGGGATGACAATTGCTCAGTGGCGCAACATGGGATACCAGAACCAACCTGAACACCAGGCATTTGCACAACTATTACAAGCACCACATGATGATGCTCAAATTATAATTAGAGATCGTTTTCCTGTTCCCAGATTGGTAGTTTGTGATCAACACGGTTCCCAGGCTAGATTTTTATTAGCAAAGCTGAACCCCTCGGCAACATATAATACTGCACATGAGATGTCTGCCGGTTCAGATGTAATCTTCACTGATGATGTCAGCCTTCAAGTCTTCTTTGAGCATCTTCAAAAGCTGGCCGTCCAATCTTAA | 2340 | 0.4632 | MSELASTDPEGVDAVRMTWNAWPRTKVEASKCVIPLAATISLIRPHPDIPRLPYAPLRCKTCSSVLNPFSRVDFTAKIWICPFCYQRNHFPPHYSAISETNVPGELYPQYTTVEYALPLSTNPNSLGNPNLDPAHQLQPCPVFVFVLDTCMIEEEMEYVKSALRQAIGLLPDNALVGFVSFGTQVQVHELGFSDMSKVYVFRGSKEIPKEQILEQLGLGASGRRQAGGYQKGMQGGFPSSGVTRFLLPASDCEYTLNSLLDELQTDQWPVPPGSRPARCTGVALSVAAGLLGACVPGTGARIIALVGGPCTEGPGSIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYEGLAKQLVSQGHVLDLFASALDQVGVAEIKVAVERTGGLVVLAESFGHSVFKDSFKRVFEDGEQSLGLCFNGTLEINCSKEIKIQGIIGPCTSLEKKGPAVADTVIGEGNTTAWKMCGLDKSTCMTVMFDLSSSDRSNNPGTVNPQFYLQFLTSYQGPDGQLVLRVTTVTRRWVDNAVSSEELVQGFDQETAAVVMARYASLKMETEEGFDATRWLDRYLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLISYSFNSLPAPALLDVSSIAADRILLLDSYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLQAPHDDAQIIIRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNTAHEMSAGSDVIFTDDVSLQVFFEHLQKLAVQS | 779 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere03g1851 | 779 | Gene3D | - | 10 | 518 | - | - | |
| Dere03g1851 | 779 | SUPERFAMILY | Helical domain of Sec23/24 | 535 | 637 | IPR036175 | GO:0006886|GO:0006888|GO:0030127 | |
| Dere03g1851 | 779 | Gene3D | - | 53 | 112 | - | - | |
| Dere03g1851 | 779 | Pfam | Gelsolin repeat | 647 | 735 | IPR007123 | - | |
| Dere03g1851 | 779 | FunFam | Protein transport protein SEC23 | 53 | 112 | - | - | |
| Dere03g1851 | 779 | Pfam | Sec23/Sec24 helical domain | 535 | 631 | IPR006900 | GO:0006886|GO:0006888|GO:0030127 | |
| Dere03g1851 | 779 | SUPERFAMILY | vWA-like | 141 | 407 | IPR036465 | - | |
| Dere03g1851 | 779 | SUPERFAMILY | Zn-finger domain of Sec23/24 | 47 | 118 | IPR036174 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Dere03g1851 | 779 | Gene3D | Severin | 637 | 741 | IPR029006 | - | |
| Dere03g1851 | 779 | Gene3D | von Willebrand factor, type A domain | 140 | 415 | IPR036465 | - | |
| Dere03g1851 | 779 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 7 | 778 | IPR037364 | - | |
| Dere03g1851 | 779 | Pfam | Sec23/Sec24 zinc finger | 56 | 94 | IPR006895 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Dere03g1851 | 779 | FunFam | Protein transport protein SEC23 | 532 | 655 | - | - | |
| Dere03g1851 | 779 | Gene3D | Sec23/Sec24 helical domain | 532 | 776 | - | - | |
| Dere03g1851 | 779 | FunFam | Protein transport protein SEC23 | 140 | 416 | - | - | |
| Dere03g1851 | 779 | SUPERFAMILY | C-terminal, gelsolin-like domain of Sec23/24 | 638 | 778 | IPR036180 | - | |
| Dere03g1851 | 779 | FunFam | Protein transport protein SEC23 | 637 | 741 | - | - | |
| Dere03g1851 | 779 | Pfam | Sec23/Sec24 beta-sandwich domain | 417 | 521 | IPR012990 | - | |
| Dere03g1851 | 779 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 8 | 534 | - | - | |
| Dere03g1851 | 779 | Pfam | Sec23/Sec24 trunk domain | 140 | 406 | IPR006896 | GO:0006886|GO:0006888|GO:0030127 | |
| Dere03g1851 | 779 | CDD | Sec23_C | 627 | 747 | IPR037550 | GO:0030127|GO:0090114 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere03g1851 | Dere-ChrDere03 | 30324253 | 30331712 | Dispersed/Wgd |