Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1845 ATGGAGAATTTCGTAATTCAGAGTCACACTCACCATCTCCACCCCCACCTCCACCTCTATGCCAATTGCAGAATAGCAAAACCGTGGAACACCTTTGTTGAAGCGCAGTTGAGAAAACCCTTCACCAAATTCCCATCTCTTACTACTCAAATCCGTCTTTGCTCTATCCATATCTCACCAATAGATTCGTTTTCAGATAGCACTTCCGTGCAGCACAAAACCCTTCTTGTTGAGGCTTACCATGAGCATCACAGACTCAAAACCTTACTGCAAAAATTACAGAAGAAAGATTCATGCTCTCTTCAGATACTCAAAGAAGATGGAGATTGGTCCAAAGACCATTTCTGGGCCGTCGTCAGGTTCCTTAAACATGCCTCCAGATCCAAAGAAATCCTTCAGGTTTTTGATATGTGGAAGAAAATCGAAGAATCACGGATTAGTGAGTTCAACTATAACAAGATAATATGTGCATTGAGTGAAGAAGGAATGATGGAAGAGGCACTATCTGCACTTCAGGAGATGAAAAATCATGGACTCAAACCTTCTTTGGCGACCTACAATCCAATAATTCATGGTTTATCCATAGAAGGTAAATTCAGTGATGCTTTGTATTTTCTTAGTGAGATGAAAGCATTTGGTTTAGTGCCAGACACTGAAACATATGATAGTTTAATTCAAGGCTATGGGAAGTTTGAGATGTACGATGAGATGGGCATGTGTGTGAAAAATATGGAGTTTGATGGGTGTTCTCCTGATCATATAACTTATAACATACTTATCAGAGAATATTCAAAAGGTGGGCTGCTTCAGAGAATGGAATCAGTATATCAAAGAATGCTTTCCAAAAGAATGCGTTTGCAGTCATCTACTTTGGTTGCAATGCTTGAAGCTTATGCTAGATTTGGGATAGTTATAAAGATGGAAAAAATTTATCGTAAACTTTTGAACTCAGAAACCCCTTTAAAGGATGATTTGATAAGAAAACTGGCTGAAGTTTATATTGGGAACTATATGTATTCAAGATTAGAGGACTTGGGGCTTGACTTACGTTCGACATTTGGTGGGACTGAACTTGTATGGTGTCTGTGCCTCCTTTCTTATGCTTGTCTTTTGAGTCGAAAAGGCATGGATATCATTGTTCGAGAAATGCAGGAAGCCAAGGTTCACTGGAATGTTACAGTTGCAAATATTATCATGCTAGCTTATGTGAGGATGAATGATTTCAAGCACTTGAGAATTTTGCTTTCACAATTGCCAACCCGTCAGGTGAACCCTGACATAGTCACTATTGGAATTCTGTTTGATGCAAACAGAATGGGTTTTGATGGCAGTGGAACTTTAGAAACATGGAGAAGGATGGGCTATCTTCATAGAGTTGTAGAAATGAATACAGATTCTCTTGTCCTTACTGCATTTGGGAAAGGTCATTTTCTTGAAACCTGTGAACAAGTGTACTCTTCTCTGCACCCTGAGGATAGAGATAGGAAAACATGGACTTATGATGACCTCATTGATTTAGTGTCTGAACATATTGAAGGTAGTATCAGCTTTAGGACACCCAAATAA 1566 0.3908 MENFVIQSHTHHLHPHLHLYANCRIAKPWNTFVEAQLRKPFTKFPSLTTQIRLCSIHISPIDSFSDSTSVQHKTLLVEAYHEHHRLKTLLQKLQKKDSCSLQILKEDGDWSKDHFWAVVRFLKHASRSKEILQVFDMWKKIEESRISEFNYNKIICALSEEGMMEEALSALQEMKNHGLKPSLATYNPIIHGLSIEGKFSDALYFLSEMKAFGLVPDTETYDSLIQGYGKFEMYDEMGMCVKNMEFDGCSPDHITYNILIREYSKGGLLQRMESVYQRMLSKRMRLQSSTLVAMLEAYARFGIVIKMEKIYRKLLNSETPLKDDLIRKLAEVYIGNYMYSRLEDLGLDLRSTFGGTELVWCLCLLSYACLLSRKGMDIIVREMQEAKVHWNVTVANIIMLAYVRMNDFKHLRILLSQLPTRQVNPDIVTIGILFDANRMGFDGSGTLETWRRMGYLHRVVEMNTDSLVLTAFGKGHFLETCEQVYSSLHPEDRDRKTWTYDDLIDLVSEHIEGSISFRTPK 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1845 521 Gene3D Tetratricopeptide repeat domain 77 233 IPR011990 GO:0005515
Dere03g1845 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Dere03g1845 521 Gene3D Tetratricopeptide repeat domain 234 319 IPR011990 GO:0005515
Dere03g1845 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Dere03g1845 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Dere03g1845 521 Coils Coil 76 96 - -
Dere03g1845 521 NCBIfam pentatricopeptide repeat 254 284 IPR002885 -
Dere03g1845 521 NCBIfam pentatricopeptide repeat 151 182 IPR002885 -
Dere03g1845 521 NCBIfam pentatricopeptide repeat 220 252 IPR002885 -
Dere03g1845 521 NCBIfam pentatricopeptide repeat 185 218 IPR002885 -
Dere03g1845 521 PANTHER OS08G0520200 PROTEIN 51 510 - -
Dere03g1845 521 Pfam PPR repeat family 149 193 IPR002885 -
Dere03g1845 521 Pfam PPR repeat family 216 264 IPR002885 -
Dere03g1845 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Dere03g1845 521 Gene3D Tetratricopeptide repeat domain 357 516 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1845 110 453 Glycosyltransferase AT1G05670 21.008 4.44e-13 70.1