Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1844 ATGCCAGAGTTTATGGGCATCGAGTTCCTCACAGGCTGGCTTCTACACCAACTAAAATCCATTATTCTGATAGCACTTCATCATCTGGGTCCATCACAAGAAGCTCCTCCTCCTCCTGATGCTTCTGAAAGTTCCACTTCCACGAGCAACCTTGTTCTAATATTGGATGGTTTATCACAGACTCTAGTCCCAGTTCATGTTCTAACATCACTGATCAAAGAGAAGCTTCCCATTATAGAGTACAAGAAATTCTTGGAGAGATCTGTTCATGAGGAAGGATTACAAGTAGAGAAAGAAGAAATGGTATGTGCTGTGTGCTTGAACACCATTGAGGGTGTCCACAAGATCAGGGAGATATCAAATTGTTGTCACATATTTCACTGTGAGTGCTTGGATAGATGGGTGGACCAGAACCAGGTGACTTGTCCTGTGTGCAGAAGCATTCTATTTCCAGAAAAAGCGCTGGTGGGGTTGAATGAACACTCTCCTTTCCCAATAGCCCCTTACACTTGCTTGGATGTTTGCCTCAGATTTCTGTATAAACACGGTAATGGAAAATTGATACGCATAAGTATGAAAAGAATGAAGTCTTATCTTCCCCAATAA 606 0.4224 MPEFMGIEFLTGWLLHQLKSIILIALHHLGPSQEAPPPPDASESSTSTSNLVLILDGLSQTLVPVHVLTSLIKEKLPIIEYKKFLERSVHEEGLQVEKEEMVCAVCLNTIEGVHKIREISNCCHIFHCECLDRWVDQNQVTCPVCRSILFPEKALVGLNEHSPFPIAPYTCLDVCLRFLYKHGNGKLIRISMKRMKSYLPQ 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1844 201 Pfam Ring finger domain 103 146 IPR001841 -
Dere03g1844 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 150 IPR013083 -
Dere03g1844 201 SUPERFAMILY RING/U-box 97 154 - -
Dere03g1844 201 ProSiteProfiles Zinc finger RING-type profile. 103 146 IPR001841 -
Dere03g1844 201 PANTHER RING ZINC FINGER PROTEIN-RELATED 65 152 - -
Dere03g1844 201 SMART ring_2 103 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1844 Dere-ChrDere03 30276457 30277211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1844 72 151 C3H Transcription Factor Family AT3G43430 39.773 3.53e-14 65.9