Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1842 ATGCAGAAAAAGAGACATTTACGTCAATTGAAGCATCCATTCAATTCTCACCCGTTTGAGGCAGTGCTGCATGGATCATGGCAAGCTTTGGAGTATATAACAGTTAGGGGAGGAACAATGGCCTTACAGTTTGAAAACAATAACTATGTAGTTACAGAGAAGGCCCCATTTTCAGACTTTCGGATAAGGTCAAGGAAAGCTACTATATCAGATTGCTCCTGCTTTTTAAGACCTGGAGTTGACATATGTGTGCTATCAGCCCCTCAACATAATAATATCTCAGATCAAAATAATCTTAGCCCTGTGTGGGCTGATGCTAAAATAAGTTCTATACAGAGAAAGCCACATGAATCTGAGTGCTCGTGTCAGTATTATGTCAACTTATATGTTAGTCAAGGTTGTCTTGGTACAGAGATAAGAACGCTCAGTAAGGAGATTAAAGTATTTGGAATAAATCAAATTTCCATTCTCCAGAAGCTTGAACATAGTCCTTGTGAAGATCAACACTATCGGTGGGATTCATCCGAGGACTGTCATGCAGTACCACAAACTAAATTGCTTTTAGGGAAATTTTTGTCTGATATTTCATGGTTAGTTGTCACCTCAGTTTTAAAGCAAGTTTCATTCTGTGTGAGATCTGTAGGTAAGAAGATCGTGTATCAAATTTTAGGGGGTGATAATAATAGCTCACTATTTAACATTGTAAATTTCAGAGTCGACAAAGACAATGGCATGTTAGTACCCATTGTTTCTCAAGTTGTTTCATCTGACATCAATAGGGTTAAACATACACATGAGTCCCATGAAGATAAAGCATCTCCATCTTATAATCTTGAGGGTTTGCGTCGTTCCAAACGTCGGAATGTACAACCTGAGCGCTACCTTGGCTGTGATGAGACTTTAGTGTTGGATGTTGGTTTTGTTCGAACTAGGCCGTACAAGATGGACACTCGAAAAGATGATGACGAGGACGATGAATTGTCAATGCCATTATCATCCTTGTTTGGTTTGCAAGAAAATATTCAAGTAAAGAATGGTGACAGTGGAATAAAGTTCGATGAAATAAAGTCCTGCCAGAAGCCTATAGTATACAAAAGGAGGCCTAAATTCAGGGATGTGAAGTCAAGTGGCCCTGATATTAGTGAACTTCAATCTGAACTTGCTATTGTTCCTGTTCCTCATGAAAGTGATCCTATTTCCATAGAGCATTTTGATCACAATGCCAAGGTGAGCAAACATTATGCATACAAAAATGTTGAATTTCCTACCAAATATGATCAACTGATGGGTAGCCCTGAACCAAAGAGGAGCAATATCGGTCTATTAGCTTTTGAGCCCTATAATCATACTTCAAAGATTCCAGATGTTGAAAATTATGCGGAAGAGATTGTTGATATTTCTTCCAGATGTCATTATAATTATGGAACACCTAAATTGAAGAGGAAGAATTCATCTGGTTTGGATGATATGGATTTCCAAGGTAGATGGGAAGGGATAAATTCTAATAAAGGAGTTCAAGGGAGAAAATATCATTCAACATATTCAAGAAGTAGACAATTTGATGAAGAAAGAACTTATAAAGCTAGATCCTTAAGTGCAGGTGCCTACAAGGAATTGATAGATTCATACTTAAAGAATATGAATACTAAACCATCCAAAGTAGAGCTTCCTATTACTGAACAGTGGACACAATTCAAGGAAACAAGCCAATTAGGACAAAAGAAGGAAAAAGAGGCACCCCAAATGGAGGATGAGCAAGAAATTGATGAACTTGATATGTTGTGGAGAGAAATGGAAGTTTCATTGGCATCCAGTTATTTTGATGAAGACACAGAGGTTTCAAATGCTGCGGTTTTTACTGAGGCTTGGGAAAAATCCAATAAACATTGTCAACATGAGTATAGAATGAATGAAGAAATTGGAATTTACTGCCTCAAATGTGGCTTTGTCAGCACTGAGATGAAAGATGTTTCACCACCCTTTATGGAACGTTCAGCATTGCACCAAGAGGAGAAGCAATGCAATGGAGAAGGTTTAGAAACAGAGCCAAAGGCAGAGGAAGATGATGGTTTCCAACTTTTACTGACTCATGCTTTGCCTGATGAGCCTATATCTGAAGAAAATGATAATGTCTGGGCATTAATTCCTGAACTTAGATGGAAGTTACATGTCCACCAAAGAAAAGCTTTTGAATTTCTTTGGAAAAATATTGCTGGGTCCATGGACCCAGCACTTATGGAAGCAGCATCCAAAAGAAGAGGCGGTTGTGTGATATCTCATTCTCCTGGAGCCGGAAAAACTTTCCTTATTATAGCCTTTCTTGTTAGCTACTTGAAGTTATTCCCAGGGAAGCGACCACTGGTTCTCGCTCCAAAAACAACACTATATACTTGGTATAAAGAATTTCTTAAATGGAAAATTCCTATACCAGTATATCTGATTCATGGTCGTAGAACCTACAGAGTATTCAAGCAGAATACAGTGGTTTTTGATGGAGGTCCAAAGCCTACTGATGATGTCAAGCACATTATAGATTGCCTGGAAAAGATACAAAAGTGGCATGCGCACCCAAGTGTTCTAGTCATGGGTTATACTTCATTTTTAACATTGATGCGTGAGGATTCAAAGTTTTCTCACAGAAAGTATATGGCTAAAGTACTGAGGGAAAGCCCTGGTATCCTGATACTGGATGAAGGGCACAATCCTAGAAGTACAAAATCGAGGTTGAGGAAAGGTTTGATGAAAGTGCAGACAGAATTGAGAATATTACTTTCAGGTACATTGTTTCAGAACAATTTCTGTGAATACTTTAATACTCTCTGCTTGGCAAGACCAAAGTTTACGTTTGAAGTGCTGAAAAAATTGGACCCTAAATACAAGAGGAAAACGAAAGGAACAGGAAAAGCACGTCATTTAATTGAGTCTCGAGCTAGAAAATTCTTCTTGGATAATATTGCGAAAAAAATCGACTCAAATGACGGCGAGGAGAGAATACAGGGTCTAAACATGTTGAGAAATATCACAAGTGGTTTTATAGATGTTTATGAAGGTGGGAGTTCAGAGAACCTTCCTGGTTTACAAATATATACATTGTTAATGAATACCACTGATATACAACATGAGATTCTGCAGAAACTCCAGAGGAAAATGTCTGGGTGCAGTGGATATCCATTGGAATTAGAGCTTTTGATAACCCTTGGATCAATACATCCTTGGTTAGTCAAAACAGCCGTATGTGCTGAGAAGTTTTTCTCTATGGATCAATTGATGGAGCTAGAGAAATGGAAGTTTGATTTAAAAAAAGGGTCAAAAGTAAGATTCGTTTTGAGCCTGGTCTACCGCGTTGTTAGGAAGGAGAAGATTCTTATGTTTTGCCACAACATTGCACCTGTGAGGTTATTTACAGAATTATTTGAGAAGTTCTTTGGATGGCAAAAAGGTCGAGAAGTTCTGGTACTTACTGGGGAGCTAGAGCTCTTTGAAAGAGGAAGGGTGATGGATAAGTTTGAGGATCCTGGTGGAGCATCAAAGATACTCCTTGCTTCAATTTCTTCTTGTGCTGAAGGCATTAGTTTGACTGCAGCCTCTCGGGTGATTTTGTTGGACTCAGAATGGAATCCATCAAAAACGAAGCAGGCTGTTGCACGGGCCTTTCGTCCTGGTCAGCAAAAGATGGTTTATGTGTATCAGCTGCTGGCAACAGGCACATTGGAGGAAGACAAATACAGAAGAACCACTTGGAAAGAGTGGGTTTCGAACATGATTTTTAGTGAAGATTTTGTGCAGGACCCTTCCCGATGGCAAGCAGAAAAGATTGAAGATGACATACTTCGGGAAATGATTGAGGAAGACCGGTCTAATTCATTCCATATGATTATGAAGAATGAAAAGGCATCCAAAAACTGA 3906 0.3881 MQKKRHLRQLKHPFNSHPFEAVLHGSWQALEYITVRGGTMALQFENNNYVVTEKAPFSDFRIRSRKATISDCSCFLRPGVDICVLSAPQHNNISDQNNLSPVWADAKISSIQRKPHESECSCQYYVNLYVSQGCLGTEIRTLSKEIKVFGINQISILQKLEHSPCEDQHYRWDSSEDCHAVPQTKLLLGKFLSDISWLVVTSVLKQVSFCVRSVGKKIVYQILGGDNNSSLFNIVNFRVDKDNGMLVPIVSQVVSSDINRVKHTHESHEDKASPSYNLEGLRRSKRRNVQPERYLGCDETLVLDVGFVRTRPYKMDTRKDDDEDDELSMPLSSLFGLQENIQVKNGDSGIKFDEIKSCQKPIVYKRRPKFRDVKSSGPDISELQSELAIVPVPHESDPISIEHFDHNAKVSKHYAYKNVEFPTKYDQLMGSPEPKRSNIGLLAFEPYNHTSKIPDVENYAEEIVDISSRCHYNYGTPKLKRKNSSGLDDMDFQGRWEGINSNKGVQGRKYHSTYSRSRQFDEERTYKARSLSAGAYKELIDSYLKNMNTKPSKVELPITEQWTQFKETSQLGQKKEKEAPQMEDEQEIDELDMLWREMEVSLASSYFDEDTEVSNAAVFTEAWEKSNKHCQHEYRMNEEIGIYCLKCGFVSTEMKDVSPPFMERSALHQEEKQCNGEGLETEPKAEEDDGFQLLLTHALPDEPISEENDNVWALIPELRWKLHVHQRKAFEFLWKNIAGSMDPALMEAASKRRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFLKWKIPIPVYLIHGRRTYRVFKQNTVVFDGGPKPTDDVKHIIDCLEKIQKWHAHPSVLVMGYTSFLTLMREDSKFSHRKYMAKVLRESPGILILDEGHNPRSTKSRLRKGLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFTFEVLKKLDPKYKRKTKGTGKARHLIESRARKFFLDNIAKKIDSNDGEERIQGLNMLRNITSGFIDVYEGGSSENLPGLQIYTLLMNTTDIQHEILQKLQRKMSGCSGYPLELELLITLGSIHPWLVKTAVCAEKFFSMDQLMELEKWKFDLKKGSKVRFVLSLVYRVVRKEKILMFCHNIAPVRLFTELFEKFFGWQKGREVLVLTGELELFERGRVMDKFEDPGGASKILLASISSCAEGISLTAASRVILLDSEWNPSKTKQAVARAFRPGQQKMVYVYQLLATGTLEEDKYRRTTWKEWVSNMIFSEDFVQDPSRWQAEKIEDDILREMIEEDRSNSFHMIMKNEKASKN 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1842 1301 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 52 1299 IPR044567 GO:0080188
Dere03g1842 1301 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 747 946 IPR014001 -
Dere03g1842 1301 SMART ultradead3 718 962 IPR014001 -
Dere03g1842 1301 Coils Coil 1293 1301 - -
Dere03g1842 1301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 694 948 IPR027417 -
Dere03g1842 1301 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1108 1268 IPR001650 -
Dere03g1842 1301 Pfam Helicase conserved C-terminal domain 1104 1220 IPR001650 -
Dere03g1842 1301 Pfam SNF2-related domain 722 964 IPR000330 GO:0005524|GO:0140658
Dere03g1842 1301 SMART helicmild6 1132 1221 IPR001650 -
Dere03g1842 1301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1022 1285 IPR027417 -
Dere03g1842 1301 Gene3D - 1025 1301 IPR027417 -
Dere03g1842 1301 Gene3D - 699 987 IPR038718 -
Dere03g1842 1301 CDD SF2_C_SNF 1103 1232 - -
Dere03g1842 1301 CDD DEXHc_ATRX-like 722 961 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1842 Dere-ChrDere03 30252073 30257669 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1842 1147 1256 RAD5 or RAD16-like Gene Family AT5G05130 35.135 3.41e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere03g1842 SNF2_N 1.5e-15 CL0023