Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1834 ATGGGGCACCCCAAACTGAAAACCCTAGTTTCTCTCTCTATACTCATTTTCTCTCTCCTATCCTCCGCCATTGCTGACGATGCAGCTGTCATGTCCAAGCTTGCCAAAGCCCTCTCGAATCCTTCAGGTTGGTCCGATACCAATTTCTGCAATTGGGACGGCGTCAAATGTGACTCCGGCCGCGTCTCCTCCATCAACCTTGCTTCAAAGTCACTTTCTGGCACTCTCCCATCCGATCTCAACTCTCTCTCTCAGCTCACTTCCCTCTCTCTTCAGAACAATGCTCTCTCAGGCCCTTTGCCATCTTTGGCAAATCTCTCTTTGCTTCAAACTGTGTACCTTGACTTCAACAATTTCACCTCCATCCCTGCCGGTTGCTTCAAGGGGCTCACCAGCTTGCAGACCCTCAGCTTGAGCAACAACATCAACCTGGAAGCCTGGACTTTTCCAACCGATTTGACTCAGTCTTCGAATCTGGGGACTCTTGACCTCGGAAAGGCTAATGTCGTCGGTTCTTTGCCGGATATATTCGTCTCCTTACCGAGCTTGCAGAATGTTCGTCTCTCTTACAACAACCTCACTGGTGGGTTGCCTGCCACGTTTAATGGATCTGGAATCGTGAACTTATGGCTTAACAATCAACTCAATGGGTTATCGGGTACAATCGACGTGTTATCATCAATGGAGCAGTTGTCTCAGGTTTGGCTTCACAAGAACCAGTTCACAGGTCCCATTCCCGACTTGTCAAATTGCAAGAATTTGTTTGATTTGCAGCTTCGGGACAATCTGTTAACTGGTATAGTCCCACCTTCTTTGATGTCTCTCTCAAGCTTGAAGAACGTTTCCTTTGACAACGATAAGCTGCAGGGGCCGGTGCCCGAATTTGGCAGTGGTGTGACGGCTACTCTTGATGGGAATAGCTTTTGTTTGAAAAGTCCAGGACCTTGCGATGCGCGAGTTACAACGTTGCTTGAGATTGCTGCAGCTTTTAGGTATCCGATTAGGTTTGCGGACTCATGGGAAGGGAATGACCCCTGTAATGATTGGAGTTTTATTGTGTGTACAGGGGGGAAGATTACCACGGTGAATATGGGGAAGCAGAATTTCGGGGGAACAATTTCACCTGCATTTGGGAATCTTACAGATTTAAGGAACTTGTATCTGAGTGGCAATAATTTGACTGGGTCAATACCTGATAGCTTAACAACTTTGCCTCAACTTGAGGTTCTTGATGTATCTAACAACAATCTTTCTGGAGAGATCCCTAAATTCGCGTCAAAGGTGAAGCTGACAACTACTGGTAATCTTATGCTGGGGAAAACTCCCAGTTCGGCAGGTGGAGGAAGTGGAAGTAGTCCTACTACGGGTTCTGATGATATTACACCTGTTGGAAGTCCATCTGAAAAGGCAAATAGTACTTCATTGTCACCTGGTTGGATTGCAGGCATAGTCGTTATTGTCCTATTCTTTGTGGCAGTGGTATTGTTTGTCTCTTGCAAGTGTTATGCTAGAAATCGTCATAAAAATTTTGGAAGGGTTGGTAATCCTGAAAATGGAAAGGGAGACGTTAAAATTGATGTATCAATTGTTTCCAATGGATATGCTGGAGTTCCAAGTGAATTACAAAGCCAGAGCAGTGGTGATCGCAGTGACCTTCATGTTTTTGAGGGTGGCAGTGCTACAATTTCAATTCAAGTTCTTCGGCAAGTAACAAATAATTTCAGTGAAGATAACATTTTGGGTAGGGGAGGATTTGGAGTTGTTTACAAAGGGGAGTTGCATGATGGAACAAAAATTGCTGTGAAGAGAATGCAATCTGTTGCAATGGGAAGCAAAGGATTGAATGAGTTCCAAGCAGAGATTGCTGTCCTTAGTAAAGTCAGGCATAGACATTTGGTTGCTCTTCTAGGATATTGCATTAATGGGAATGAAAGGCTTTTAGTTTATGAGTATATGCCACAAGGGACACTAACACAACATCTGTTTGAATGGCGTGAGAATGGGTGCGCACCTCTGACTTGGAAGCAAAGGGTTGCAATAGCTTTGGATGTAGCGCGGGGAGTGGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCACAGAGACTTAAAACCCTCAAATATACTTCTAGGTGATGATATGAGAGCAAAGGTTGCAGATTTTGGGTTGGTTAAAAATGCACCTGATGGGAAATATTCTGTAGAGACACGTTTGGCTGGAACTTTCGGGTATCTTGCACCTGAATATGCAGCTACTGGAAGAGTGACAACCAAAGTGGATGTGTATGCATTTGGGGTTGTTTTGATGGAACTGATAACTGGTAGGAGGGCATTGGATGACAGTGTCCCAGATGAAAGGTCTCACTTGGTGTCATGGTTCCGTAGGGTTCTAATTAACAAGGACAACATCCCAAAGGCTATCGATCAAACTCTAGACCCCGACGAGGAGACGATGGAAAGCATATATAAGGTGGCTGAGCTTGCAGGGCATTGCACTGCTCGTGAGCCATACCAAAGGCCAGATATGGGCCATGCAGTGAATGTGTTGGTTCCTCTTGTAGAGCAGTGGAAACCAACTAGCCATGAAGAAGAAGAAAGTTATGGCATTGACCTTCACATGAGCCTGCCTCAAGCTCTACAAAGATGGCAAGCCAATGAAGGCACTTCTGCAATGTTTAATGACATGTCCATCTCACAAACCCAATCAAGCATTCCCTCGAAACCTTCAGGATTTGCAGACTCCTTTAATTCAATGGATTGCAGGTAA 2769 0.45 MGHPKLKTLVSLSILIFSLLSSAIADDAAVMSKLAKALSNPSGWSDTNFCNWDGVKCDSGRVSSINLASKSLSGTLPSDLNSLSQLTSLSLQNNALSGPLPSLANLSLLQTVYLDFNNFTSIPAGCFKGLTSLQTLSLSNNINLEAWTFPTDLTQSSNLGTLDLGKANVVGSLPDIFVSLPSLQNVRLSYNNLTGGLPATFNGSGIVNLWLNNQLNGLSGTIDVLSSMEQLSQVWLHKNQFTGPIPDLSNCKNLFDLQLRDNLLTGIVPPSLMSLSSLKNVSFDNDKLQGPVPEFGSGVTATLDGNSFCLKSPGPCDARVTTLLEIAAAFRYPIRFADSWEGNDPCNDWSFIVCTGGKITTVNMGKQNFGGTISPAFGNLTDLRNLYLSGNNLTGSIPDSLTTLPQLEVLDVSNNNLSGEIPKFASKVKLTTTGNLMLGKTPSSAGGGSGSSPTTGSDDITPVGSPSEKANSTSLSPGWIAGIVVIVLFFVAVVLFVSCKCYARNRHKNFGRVGNPENGKGDVKIDVSIVSNGYAGVPSELQSQSSGDRSDLHVFEGGSATISIQVLRQVTNNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMQSVAMGSKGLNEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFEWRENGCAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDSVPDERSHLVSWFRRVLINKDNIPKAIDQTLDPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSHEEEESYGIDLHMSLPQALQRWQANEGTSAMFNDMSISQTQSSIPSKPSGFADSFNSMDCR 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1834 922 FunFam Receptor-like kinase TMK4 25 314 - -
Dere03g1834 922 Pfam Protein tyrosine and serine/threonine kinase 577 848 IPR001245 GO:0004672|GO:0006468
Dere03g1834 922 FunFam receptor protein kinase TMK1 536 651 - -
Dere03g1834 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 699 711 IPR008271 GO:0004672|GO:0006468
Dere03g1834 922 MobiDBLite consensus disorder prediction 899 922 - -
Dere03g1834 922 Gene3D Ribonuclease Inhibitor 25 314 IPR032675 -
Dere03g1834 922 CDD STKc_IRAK 580 853 - -
Dere03g1834 922 ProSiteProfiles Protein kinase domain profile. 574 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1834 922 FunFam Leucine-rich repeat receptor-like kinase 318 441 - -
Dere03g1834 922 SUPERFAMILY L domain-like 29 430 - -
Dere03g1834 922 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Dere03g1834 922 MobiDBLite consensus disorder prediction 439 473 - -
Dere03g1834 922 Pfam Leucine rich repeat 109 164 IPR001611 GO:0005515
Dere03g1834 922 Pfam Leucine rich repeat 376 417 IPR001611 GO:0005515
Dere03g1834 922 ProSiteProfiles Leucine-rich repeat profile. 382 405 IPR001611 GO:0005515
Dere03g1834 922 Gene3D Transferase(Phosphotransferase) domain 1 652 875 - -
Dere03g1834 922 Gene3D Ribonuclease Inhibitor 317 441 IPR032675 -
Dere03g1834 922 Pfam Leucine rich repeat N-terminal domain 28 58 IPR013210 -
Dere03g1834 922 Pfam Leucine rich repeat N-terminal domain 320 354 IPR013210 -
Dere03g1834 922 SUPERFAMILY Protein kinase-like (PK-like) 550 850 IPR011009 -
Dere03g1834 922 Gene3D Phosphorylase Kinase; domain 1 537 651 - -
Dere03g1834 922 PANTHER OSJNBA0070M12.3 PROTEIN 10 922 - -
Dere03g1834 922 FunFam receptor protein kinase TMK1 652 869 - -
Dere03g1834 922 SMART LRR_typ_2 380 403 IPR003591 -
Dere03g1834 922 SMART LRR_typ_2 106 129 IPR003591 -
Dere03g1834 922 SMART LRR_typ_2 180 203 IPR003591 -
Dere03g1834 922 SMART LRR_typ_2 404 428 IPR003591 -
Dere03g1834 922 SMART LRR_typ_2 130 156 IPR003591 -
Dere03g1834 922 SMART serkin_6 574 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1834 Dere-ChrDere03 30160047 30163512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1834 57 850 Receptor kinase-like Gene Family AT5G07280 32.571 1.15e-94 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Dere03g1834 PK_Tyr_Ser-Thr 9.5e-48 CL0016