Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1812 ATGCAGGGCCTATTCGCTATCCTGTTCCTTTGCTTATGTGCTAGAATAACAGCTCAAGCTAATCCTAGTTTCAATGTAGTTAATTATGGAGCAACAGGGAATGGGCATACTGATGATTCTCAAGCATTTCTCAAGGCATGGAGGGATGTTTGTAATGCAGCTGAGGACAATCCAACCCTCTTCATACCCAAAGGCAAAACCTTCATGTTGCAGCCTGTGGTTTTCCAAGGCCCTTGCAATCCTTCAACCATCAACATTATGATTCGAGGGAGTATTATTGCACCAAGAAGTGTTGATGCTTGGAAATGGCCAAGTAATGATAGGGACACATGGATCCGTTTCTCCTACATAAATGAGCTTGTCGTCAATGGAGGAGGCCTCATTGATGGCCAAGGAGCTCCATGGTGGGACTGTTTTGTCGAATACAAATGTCAAAGGCCAAGGGCTTTGGGTTTTCACAACTGTGAACATCTGAAACTTAGTGGGTTGACTGTGATTAATACACCAATGGGTCATATAAGCCTAAACAGGTGCAATGGCTCACACATCGCCAATATGCACCTTGCTTCACCTAAAGATAGCCCAAACACTGATGGGATTGATATCTCAGATTCATCCAACGTTATCATTCAGAATTCTACAATGAAAGTTGGTGATGACTGCATTGCCATCAATGGAGTTTCATCTTTCATGAACATTAGTGGTATTTTCTGCGGACCTGGTCATGGCATAAGCATTGGAAGCCTGGGAAGAGGTGGAACTTATGCCGCAGTGGAAGAAATCCATGTCAGAAATTGTACTTTCAACAGATCTTCAAATGGAGCAAGAATCAAGACATGGGAGGGAGGATCTGGGCATGCCAGAAAGATCACATATGAGGATATAGTACTGGTTGAAGCTAAGAACCCAGTGATTATTGATCAACAATACAGCTCTACTTTTGTAATGGATGCCAGAAAAGCAGTTAAAATTAGTGACATTACATATAGTAATTTTCGAGGAACTTCAACTGTTGAGAAAGCAATCCAATTGCTATGTGACGAAGTCATAGGATGCACCCGCATTGTGTTGGATCATTTTCATATAACTTCGTCTGTTCCTGGAAAGAAGACCGACGCAACGTGCATAAATGCTCATGGGACAAGTTCTTCATCTAATGTCCCACAAGTTCCATGCCTTACCTCTACATGA 1191 0.424 MQGLFAILFLCLCARITAQANPSFNVVNYGATGNGHTDDSQAFLKAWRDVCNAAEDNPTLFIPKGKTFMLQPVVFQGPCNPSTINIMIRGSIIAPRSVDAWKWPSNDRDTWIRFSYINELVVNGGGLIDGQGAPWWDCFVEYKCQRPRALGFHNCEHLKLSGLTVINTPMGHISLNRCNGSHIANMHLASPKDSPNTDGIDISDSSNVIIQNSTMKVGDDCIAINGVSSFMNISGIFCGPGHGISIGSLGRGGTYAAVEEIHVRNCTFNRSSNGARIKTWEGGSGHARKITYEDIVLVEAKNPVIIDQQYSSTFVMDARKAVKISDITYSNFRGTSTVEKAIQLLCDEVIGCTRIVLDHFHITSSVPGKKTDATCINAHGTSSSSNVPQVPCLTST 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1812 396 ProSitePatterns Polygalacturonase active site. 235 248 IPR000743 GO:0004650|GO:0005975
Dere03g1812 396 SMART pbh1 178 204 IPR006626 -
Dere03g1812 396 SMART pbh1 258 279 IPR006626 -
Dere03g1812 396 SMART pbh1 205 226 IPR006626 -
Dere03g1812 396 Pfam Glycosyl hydrolases family 28 59 381 IPR000743 GO:0004650|GO:0005975
Dere03g1812 396 PANTHER - 23 381 - -
Dere03g1812 396 Gene3D - 12 394 IPR012334 -
Dere03g1812 396 SUPERFAMILY Pectin lyase-like 8 393 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1812 Dere-ChrDere03 29723078 29725561 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1812 4 393 Glycoside Hydrolase AT5G17200 43.571 5.87e-115 340