Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1805 ATGGACGGAGGGCTACCTTCATCTGCCGGCGCCGGCGCTGGAGGCGGCGGGACTGGAGGTCCGGCACCTTTCCTGATCAAGACCTACGAGATGGTCGACGATTCTTCCACCGACGATATTGTATCATGGAGCTCCACCAACAATAGCTTCGTCGTCTGGAACCCCCCGGAGTTCGCTCGCCATCTTCTTCCCACCTATTTCAAGCACAACAACTTCTCAAGCTTCATTCGCCAGCTTAATACCTATGGATTTCGAAAAATACATCCTGAGCGATGGGAGTTCGCTAATGATGATTTTGTGAAAGATCAAAAGCATCTTCTCAAGAATATTCATCGCAGGAAACCTATCCACAGTCACAGCCATCCTCCAGGCTCTCTTGTGGATCCAGAACGTGCAGCATTTGAGGAAGAAATAGATAAACTTTCACGTGAGAAAACTGCTCTTGAATCCAATGTTTCCAGAGTTAAACAGCACAACACAACTGCAAAGCTTCAGCTGGAAGATCTATTGCAGCGGCTAGATGGTATGGAGAAGAGGCAGAAGAATTTGTTAAACTTCTTTGAAAAGGCTCTTCAAAATCCTGCTTTTGTTGAACAGCTTACACGAAAATTTGATTGCGTGGATTTATCAGCATATAATAAAAAAAGACGACTGCCTCAGGTTGATCACTCCCAGCCTGTTGCTGAAAGTGGCTTTGTTGAAAATCATGGCAATTTCAGAACTGAATTTGGGGCTGTCTTCCACCAAGATTTCTCAAATAAACTCAGATTGGAGTTATCACCAGCTGTTTCTGATATGAATTTGGTATCACGTAGTACACAGAGTTCAAATGAAGATGGGGAAATTCCGCAGAGGAGGCTATCTGATGGAACACCAAAAGGAGTGCAGACAAAAACAGCTCTTGCGTTTGCACCTGAAACTTTAGAGCTTGCAGATACTGGAGCATCTTTTACTTTCAAGATGGATTCATGTCTATCACAAAGAGCAACGACTGCTGACAGCACAAAACTGCACTCTTTGCAACTAAGTAATGAAGAAGGCGACAGTCATATATCCTGCCATCTAAATTTAACTCTGGCGTCTTCTCCTTTGCAAGTCAACAGAAATTCATACTCAGCTAGATCTCCCCAAATAGACTGTCAGGAAATTGGCAAATTGGCAGAGTCAAGATATCATGAGAATGAAAAGGATTCTAATAGCGGAGTTCCTTCAAACAGAAATCTAGTCAATGAGGTTACCAATTTAACTTCTTCACAGTCACAGGAAACTCCAAGCAACAACCAAGTGGCCTCAGCTGCTCCTGCTAGAGTAAATGATGTGTTCTGGGAACAGTTCCTTACTGAAAGACCAGGTTGTTCAGACAATGAAGAGGCAATATCCAACTACAGAGCGAATCCATACGATGAGCAAGATGAAGGCCGGTCAATTCATGGAGTCTCTAGAAATGTTAAGAATATGGATCAGCTCACTCTTTGA 1476 0.4356 MDGGLPSSAGAGAGGGGTGGPAPFLIKTYEMVDDSSTDDIVSWSSTNNSFVVWNPPEFARHLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDDFVKDQKHLLKNIHRRKPIHSHSHPPGSLVDPERAAFEEEIDKLSREKTALESNVSRVKQHNTTAKLQLEDLLQRLDGMEKRQKNLLNFFEKALQNPAFVEQLTRKFDCVDLSAYNKKRRLPQVDHSQPVAESGFVENHGNFRTEFGAVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGEIPQRRLSDGTPKGVQTKTALAFAPETLELADTGASFTFKMDSCLSQRATTADSTKLHSLQLSNEEGDSHISCHLNLTLASSPLQVNRNSYSARSPQIDCQEIGKLAESRYHENEKDSNSGVPSNRNLVNEVTNLTSSQSQETPSNNQVASAAPARVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQDEGRSIHGVSRNVKNMDQLTL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1805 491 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 270 IPR027725 -
Dere03g1805 491 Gene3D - 19 114 IPR036388 -
Dere03g1805 491 MobiDBLite consensus disorder prediction 269 296 - -
Dere03g1805 491 SUPERFAMILY "Winged helix" DNA-binding domain 20 113 IPR036390 -
Dere03g1805 491 MobiDBLite consensus disorder prediction 467 491 - -
Dere03g1805 491 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere03g1805 491 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere03g1805 491 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere03g1805 491 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere03g1805 491 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere03g1805 491 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere03g1805 491 Coils Coil 131 179 - -
Dere03g1805 491 FunFam Heat shock transcription factor 1 17 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1805 Dere-ChrDere03 29579429 29583540 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1805 1 491 HSF AT4G13980 55.533 3.95e-174 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dere03g1805 HSF_DNA-bind 1e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1805 03 29579429 29583540 Dere03g1805 03 29579429 29583540 ECH