Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1794 ATGGGCGGAGGTGGAACGATGCACACGGAGGCGCAGTACTCCTCGGCGAAGATTTCGGTGTGGTGGGACATCGAGAACTGCCACGTCCCCAAAGGCTGCGATCCGCACGCCATTGCCCAGAACATTACCTCGGCGCTGCACGCTCTCTCCAGTACCGGAATCTCCCTCAACCATGTCCCAGCTGCTGTTAAAGATGCTAGTGACAAAAAGATTCTTGTTGACATGCTGTTTTGGGCTGTGGACAATCCTGCTCCTGCTAATTATTTATTAATTTCTGGTGACCGAGACTTCTCTAACGCTCTTCATCAATTGAGGATGAGGAGATATAATATTCTTCTTGCACAGCCTCAGAAAGCATCTGCGCCCCTAGTTGCAGCTGCTAAGAGTGTATGGCTCTGGACTAGTCTCTTAGCTGGAGGACCTCCTTTAACTAATGGCGAATCACAACAATTTGGTAATAATGGCCTCCTACCAAGCCAGACACCTTTCAGACTGATGGGAACAATGTTAGAGTTCTCACTTGCAGAAGTTGATCACTACAACTAG 546 0.489 MGGGGTMHTEAQYSSAKISVWWDIENCHVPKGCDPHAIAQNITSALHALSSTGISLNHVPAAVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLTNGESQQFGNNGLLPSQTPFRLMGTMLEFSLAEVDHYN 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1794 181 CDD PIN_limkain_b1_N_like 17 116 - -
Dere03g1794 181 Gene3D - 10 135 - -
Dere03g1794 181 PANTHER LIMKAIN B LKAP 13 147 IPR024768 GO:0005777|GO:0010468
Dere03g1794 181 Pfam NYN domain 47 128 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1794 Dere-ChrDere03 29288602 29289222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1794 10 155 C2H2 Transcription Factor Family AT5G61190 64.912 3.11e-70 228