Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1776 ATGCTTTTCTTGTTTGCTTATTATGCTCAACTAGTTGATGTGGTCTGTGACTGTGACTTGATCCTGCTTTCTGTTTGGTTTTTCTGCCAATTGCTGTTGATTCTGCTCTTGGCTTCAGGCTGTAATCTTTTCATAATGGCATTGTGCAATAAACTTGGGAATCTATTAAGACAGAGTGCTGCACAGAACAGTCAAGTACCAGTTGCATCAATGCTGAATTACATTCGCTGCATGTCATCCTCCAAGCTTTTCATTGGAGGTCTTTCTTATGGAGTTGATGACCAGTCTCTCAGGGATGCATTTGCCAGCTTTGGAGATGTGGTTGAGGCAAGGGTTATCACTGATAGAGACACTGGAAGGTCCAGGGGGTTTGGATTTGTCAATTTCTCCAGTGATGAATCTGCAAGTTCAGCAATGTCTGCAATGGATGGACAGGAGCTGAATGGGCGAAACATTCGGGTAAGCTATGCAAATGATAGGCCTCCTAGACCCAGATCTTATGGTGGTGGCGATGGTGGTTATGGTGGAAGTGGTGGTGGTTATCGTAGGGATGATGGAGGTTTTGATAACCCATCCTTTTAA 582 0.4416 MLFLFAYYAQLVDVVCDCDLILLSVWFFCQLLLILLLASGCNLFIMALCNKLGNLLRQSAAQNSQVPVASMLNYIRCMSSSKLFIGGLSYGVDDQSLRDAFASFGDVVEARVITDRDTGRSRGFGFVNFSSDESASSAMSAMDGQELNGRNIRVSYANDRPPRPRSYGGGDGGYGGSGGGYRRDDGGFDNPSF 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1776 193 CDD RRM2_NsCP33_like 82 157 - -
Dere03g1776 193 MobiDBLite consensus disorder prediction 155 193 - -
Dere03g1776 193 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 153 IPR000504 GO:0003723
Dere03g1776 193 Gene3D - 58 190 IPR012677 -
Dere03g1776 193 FunFam Glycine-rich RNA-binding protein 2 70 192 - -
Dere03g1776 193 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 78 182 - -
Dere03g1776 193 SUPERFAMILY RNA-binding domain, RBD 78 187 IPR035979 GO:0003676
Dere03g1776 193 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 159 IPR000504 GO:0003723
Dere03g1776 193 SMART rrm1_1 82 155 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1776 Dere-ChrDere03 28862433 28864083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1776 80 171 Eukaryotic Initiation Factors Gene Family AT1G49760 40.217 2.11e-14 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1776 03 28862433 28864083 Dere03g1776 03 28862433 28864083 ECH