Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1751 ATGCCAATGCACGCCACCACATTGACCAAGAACAGGTTTTTGAGGCTATTGCAAGAATTGCCGTGGCTTGCGAGCTTCGCATCAATGGCTGGCGTATCTCTCCAGTGCGGGGACTGTGGGGCGCTATTGAGGTCCGTACAAGAAGCTCAGGAGCACGCAGAGCTCACCTCCCACTCCAACTTCTCCGAATCGACTGAAGCTATTCTCAACCTTGTTTGCACAATTTGTGGCAAGCCATGCCGATCCAAAACCGAGAGTGATTTGCATACAAAGAGAACTGGGCACAGTGAATTTGTTGATAAGACATCTGAGGCAGCAAAACCAATAAGTTTGGAGGTACCAAAGGTGGATGCAATGTCAGATGAGGCTGTCAATGCAACTACTGACAAGACTGAAGAAATGGTTGTTCCCGAGGTTAACAAAAATCTGCTTGAGGAACTTGAATCAATGGGTTTTTCAACTGCACGTGCAACACGTGCACTTCATTATTCTGGTAATGCTGGCCTTGAGGCTGCTGTAAATTGGGTAGTAGAGCATGAGAATGACCCTGACATAGATCAGATGCTCTTGGTACCTGCCAACACCAAAGTTGAGGCTCCTAAACCTTCTCTCACACCAGAAGAACTGAAGGCTAAACAACAGGAGCTAAGGGAGAGGGCTCGCAAGAAGAAAGAAGAGGAAGAAAAGAGAATGGAAAGAGAAAAAGAAAAGGAGAGAATTCGTATAGGCAAGGAGTTATTAGAAGCCAAGAGAATTGAAGAGGAGAATGAGAGAAAACGGTTGTTGGCTCTGCGCAAAGCAGAGAAAGAGGAAGAGAGAAAGGCCAGGGAGAAAATCAGGCAGAAATTGGAAGAAGACAAGGCTGAAAGAAGACGAAGACTTGGATTGCCTCTAGAAGAACCCTCGACTGCCAAACCTTCAATGGTTGTGGAGGAGAAAAAGAGTTCATTGCCAATCCGGCCTGCCACAAAAGCTGAGCAAATGAGAGAGTGCTTGCGCTCTCTCAAGCAAAACCACAAGGATGACGATGCCAGAGTAAAGAGAGCATTCCAGACTCTTCTGACTTATGTGGGCAATGTTGCCAAAAGTCCTGACGAGGAAAAATATAGAAGAATAAGACTGAGCAACCAAACTTTTCAGGAAAGAGTCGGTGCCTTGAAAGGGGGAGTTGATTTCCTGGAAATTTGTGGGTTTGAGAAAATCGATGGTGGAGAGTTCTTGTTTTTGCCTAGGGACAAGGTTGACAAGGCAGTCCTGAATTCTGCTGGGTCTGAACTGGACTCTGCAATAAAAAATCCCTTTTTTGGAGTTCTTTAG 1317 0.4586 MPMHATTLTKNRFLRLLQELPWLASFASMAGVSLQCGDCGALLRSVQEAQEHAELTSHSNFSESTEAILNLVCTICGKPCRSKTESDLHTKRTGHSEFVDKTSEAAKPISLEVPKVDAMSDEAVNATTDKTEEMVVPEVNKNLLEELESMGFSTARATRALHYSGNAGLEAAVNWVVEHENDPDIDQMLLVPANTKVEAPKPSLTPEELKAKQQELRERARKKKEEEEKRMEREKEKERIRIGKELLEAKRIEEENERKRLLALRKAEKEEERKAREKIRQKLEEDKAERRRRLGLPLEEPSTAKPSMVVEEKKSSLPIRPATKAEQMRECLRSLKQNHKDDDARVKRAFQTLLTYVGNVAKSPDEEKYRRIRLSNQTFQERVGALKGGVDFLEICGFEKIDGGEFLFLPRDKVDKAVLNSAGSELDSAIKNPFFGVL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1751 438 Pfam PUB domain 345 416 IPR018997 -
Dere03g1751 438 CDD PUB_UBA_plant 332 438 - -
Dere03g1751 438 Coils Coil 209 241 - -
Dere03g1751 438 SUPERFAMILY PUG domain-like 320 434 IPR036339 -
Dere03g1751 438 PANTHER F13M7.16 PROTEIN 29 438 - -
Dere03g1751 438 Coils Coil 244 289 - -
Dere03g1751 438 Pfam UBA/TS-N domain 144 175 IPR015940 -
Dere03g1751 438 MobiDBLite consensus disorder prediction 286 318 - -
Dere03g1751 438 SMART PGNneu 348 411 - -
Dere03g1751 438 MobiDBLite consensus disorder prediction 213 237 - -
Dere03g1751 438 ProSitePatterns Zinc finger C2H2 type domain signature. 36 58 IPR013087 -
Dere03g1751 438 Gene3D - 330 428 - -
Dere03g1751 438 CDD UBA_PUB_plant 138 186 - -
Dere03g1751 438 SUPERFAMILY UBA-like 125 192 IPR009060 GO:0005515
Dere03g1751 438 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 138 179 IPR015940 -
Dere03g1751 438 Gene3D - 141 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1751 Dere-ChrDere03 28555234 28564311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1751 121 438 C2H2 Transcription Factor Family AT1G04850 77.570 6.36e-152 432