Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1735 ATGCGAACTTCATGGGCAGATTTGGCTGCAAACTCTGCAGCTGAAAGTGTAGGTCCGGGCTCTTCTGCAAGCAATGCGGGAACTGGTAACTCTTCAGCTCCTACTCGCCCAGTCTATGTTCCTCCACATCTTAGGAACCGTCCACCCTCCACGGAGCCCCCTGTTCCTCAATACAGTGGCCATGCTTCTGGTTCTGGTATTAGTAGTGGTACTGGAAATGCTGGTTCACGTTGGGCTGCGCCCAGAAATGAGAATCGTTCAGGGTATGGCAGCAGTGGCCGTTCAAGTGGATGGGGAAACAGGGTTGGTGGCTGGGATCGTGGCAGGGAGAGGGAAGCCAATCCCTTTGGCGATGAGGATGGTGCAGAAGAGGCATTTAGTGAACAGGAGAATACAGGAATTAACTTCGATGCATATGAAGACATTCCTGTGGAGACCAGTGGTGGTAATGTGCCACCACCAGTAAATACATTTGCAGAGATTGACTTGGGTGAAGCACTTAATCAGAATATAAGAAGGTGCAAATATGTGAAGCCAACACCTGTTCAACGATACGCCATACCAATATCCTTTGCTGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCTGGAAAGACAGCTGCTTTCTGTTTTCCTATTATTAGTGGAATTATGAGGGGCCAACCTGTACAGAGGCCACCTCGTGGGGTGCGTACAGTATATCCACTTGCTCTTGTTCTCTCACCGACTAGGGAGCTATCAATGCAAATACATGAAGAAGCCAGGAAGTTTTCATACCAAACAGGGGTGAGGGTGGTTGTTGCTTACGGTGGTGCACCAATAAACCAGCAGCTGCGAGATCTGGAGAGAGGAGTTGACATTCTTGTTGCTACTCCTGGAAGACTGGTGGATTTGCTGGAGAGGGCTAGAGTTTCACTGCAGATGATAAGATATTTGGCCTTAGATGAAGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGGAAGATTGTAGAACAGATGGACATGCCTCCACCAGGTGTCAGACAGACTATGCTATTCAGTGCCACATTTCCAAAAGAGATACAGAGATTGGCCTCTGATTTCCTTTCAAATTATGTTTTTCTGGCTGTTGGAAGAGTGGGATCAAGTACTGATTTGATTGTCCAAAGAGTTGAATATGTTCAGGAGTCTGACAAGAGAAGTCACCTCATGGACCTTCTTCATGCTCAGAGGGCAAATGGGGTACAAGGAAAGCAAGCTTTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCACTGGAACACTGGCTTTGTATTAATGGTTTTCCAGCTACCACTATTCACGGGGACAGGACACAACAGGAAAGAGAAATGGCGTTAAGGTCATTTAAAAGTGGCAACACCCCTATATTGGTTGCGACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTGGTCAACTTTGATCTACCAAATGATATTGATGACTATGTACACCGTATTGGTAGGACAGGACGAGCAGGAAAGAAAGGTCTGGCCACTGCATTCTTTAATGACAACAATGCATCCCTAGCTAGGGCATTAGTAGATCTGATGCAAGAAGCAAATCAAGAAGTGCCTGCTTGGCTCTCACGGTATGCTGCTCGTTCTTCTTTTGGAGGAAGGAACCGTCGATCAGGTGGAGGCCGGTTTGGTGGTCGTGACTTTCGAAGAGAGGGCTTTAACAGCAGAAGTGGTTCTGACTATTACGGTGCAGGAAATAGCACTGGAGGGTATGGGGCTTCTGGTGGGTATGGGGGAGGATATGGTCCTGGTGTCAGCAGTGCATGGGATTGA 1845 0.4759 MRTSWADLAANSAAESVGPGSSASNAGTGNSSAPTRPVYVPPHLRNRPPSTEPPVPQYSGHASGSGISSGTGNAGSRWAAPRNENRSGYGSSGRSSGWGNRVGGWDRGREREANPFGDEDGAEEAFSEQENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRYAIPISFAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSNYVFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCINGFPATTIHGDRTQQEREMALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARALVDLMQEANQEVPAWLSRYAARSSFGGRNRRSGGGRFGGRDFRREGFNSRSGSDYYGAGNSTGGYGASGGYGGGYGPGVSSAWD 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1735 614 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 156 184 IPR014014 GO:0003724
Dere03g1735 614 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 372 IPR014001 -
Dere03g1735 614 Gene3D - 375 554 IPR027417 -
Dere03g1735 614 SMART helicmild6 430 511 IPR001650 -
Dere03g1735 614 MobiDBLite consensus disorder prediction 41 55 - -
Dere03g1735 614 Pfam DEAD/DEAH box helicase 180 361 IPR011545 GO:0003676|GO:0005524
Dere03g1735 614 MobiDBLite consensus disorder prediction 1 128 - -
Dere03g1735 614 MobiDBLite consensus disorder prediction 56 98 - -
Dere03g1735 614 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 126 550 - -
Dere03g1735 614 SMART ultradead3 175 387 IPR014001 -
Dere03g1735 614 CDD DEADc_DDX3_DDX4 157 378 IPR044763 GO:0003724|GO:0005524
Dere03g1735 614 Gene3D - 114 374 IPR027417 -
Dere03g1735 614 CDD SF2_C_DEAD 384 520 - -
Dere03g1735 614 FunFam Probable ATP-dependent RNA helicase DDX4 119 374 - -
Dere03g1735 614 FunFam ATP-dependent RNA helicase RhlB 375 554 - -
Dere03g1735 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 530 IPR027417 -
Dere03g1735 614 Pfam Helicase conserved C-terminal domain 396 511 IPR001650 -
Dere03g1735 614 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 383 550 IPR001650 -
Dere03g1735 614 MobiDBLite consensus disorder prediction 104 118 - -
Dere03g1735 614 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1735 Dere-ChrDere03 28217152 28223340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1735 145 543 Eukaryotic Initiation Factors Gene Family AT3G19760 32.250 5.23e-62 209