Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1730 ATGAGTCTGCCATTTTCTCTAGCAGCAAACTCTTCCATCAATGGGAGCGAAATCAATATTAGCAAATCATATAGTAGAAAAGTTGGTGTTATAAGAGCAGAAGTTACCTTGGCTCCCAAACGAACAAGGGAGAGCAATAGCATTTATCCCCAGTTGTCAAAACAAGGAGTTCCTCTTGCTGATTTGCATGTACAAGAAGTTGTAGAGAGGCAGACACAGCCAGCTAAGTTCATCCCTACAAGTCCTAGCAGGAAGCCACAGTTCCATCCTAGTTTTCTAAAGGAAGCCTACGAAATTTGTAGAAGGATCTGTGCAGAATATGCCAAGACCTTCTATCTAGGAACTCTGCTAATGACAGAAGAAAGACAGAAAGCTATATGGGCAATTTATGTTTGGTGCAGGAGAACAGATGAACTGGTTGATGGTCCCAACGCCGTCTATATGAGCACTGCTGTTCTTGATAGGTGGGAAGAGAGACTCCATGACATTTTCAATGGACGCCCCTATGATATGCTTGATGCTGCTCTTACTGATACTGTCTTTCAGTTTCCCTTGGATATTAAGCCTTTCAGGGACATGATAGAAGGTATGAGAATGGATACAAGGAAAACCCGATACAAGAATTTTGAGGAGCTGTATCGTTACTGCTACTATGTGGCCGGAACTGTTGGCTTAATGAGTGTTCCAGTAATGGGAATTGCAGCAGAGTCTCTTGTCCCTGCTCAAACCATATATAATGCAGCACTATATTTGGGTATTGGGAATCAACTGACAAACATTCTTAGAGATGTGGGGGAGGATGCATCAAGAGGTAGAGTTTATCTTCCCCAAGATGAACTTGCCCAGTTTGGCTTAAGTGACGAGAATATTTTCTCAAGAACTGTCACAGAAGAATGGAGAGTGTTTATGAAACATCAGATAACAAGGGCAAGATTCTACTTCAAGTTGGCAGAGGAAGGAGCTTCTCAGCTTGAGAAAGCTAGCCGTTGGCCGGTTTGGTCGTCGTTAATAATATATGGTAAGATCTTGGATGCAATCGAAGACAATGATTACGACAACTTGACAAAAAGAGCCTACGTAGGAAGAGCTAAGAAACTAATGATGTTGCCTATAGCTTACACCAAATCTCTCTCATTCTCTCTTAAGTTTCAACACTTAGTCGCGTCTCTATAG 1173 0.4203 MSLPFSLAANSSINGSEINISKSYSRKVGVIRAEVTLAPKRTRESNSIYPQLSKQGVPLADLHVQEVVERQTQPAKFIPTSPSRKPQFHPSFLKEAYEICRRICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAVYMSTAVLDRWEERLHDIFNGRPYDMLDAALTDTVFQFPLDIKPFRDMIEGMRMDTRKTRYKNFEELYRYCYYVAGTVGLMSVPVMGIAAESLVPAQTIYNAALYLGIGNQLTNILRDVGEDASRGRVYLPQDELAQFGLSDENIFSRTVTEEWRVFMKHQITRARFYFKLAEEGASQLEKASRWPVWSSLIIYGKILDAIEDNDYDNLTKRAYVGRAKKLMMLPIAYTKSLSFSLKFQHLVASL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1730 390 ProSitePatterns Squalene and phytoene synthases signature 2. 251 276 IPR019845 GO:0016765
Dere03g1730 390 SFLD Phytoene synthase like 94 375 IPR044843 GO:0004311
Dere03g1730 390 Pfam Squalene/phytoene synthase 107 362 IPR002060 GO:0009058
Dere03g1730 390 SUPERFAMILY Terpenoid synthases 96 380 IPR008949 -
Dere03g1730 390 ProSitePatterns Squalene and phytoene synthases signature 1. 215 230 IPR019845 GO:0016765
Dere03g1730 390 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 44 377 - -
Dere03g1730 390 CDD Trans_IPPS_HH 98 365 IPR033904 GO:0004311
Dere03g1730 390 Gene3D Farnesyl Diphosphate Synthase 90 373 IPR008949 -
Dere03g1730 390 SFLD Squalene/Phytoene Synthase Like 94 375 IPR002060 GO:0009058
Dere03g1730 390 FunFam Phytoene synthase chloroplastic 89 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1730 Dere-ChrDere03 28183852 28186071 Transposed