Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1716 ATGCAACGCACCGTTTTTCAGCCGCAGTGTCTTCACTCGCCACTCCGTTCTGAACTGTGCTCGCCGGCGTCCAGCGTATCGTGTGGTTTTCGGCGTTGGCGTTGTGATCTTTCCCTGGTTTTTGGCGTTGTGAAGCTTCCTCCGTTGCTAATTTTTTCTGGTGCAAGTTCGGCTTTTGGAGATTATAGATTAAGGGACTTAGTTTTAAAGAATTGCAATGCATGTACAAATATTGGTAGATGTGATAAATGTATCCACTTGTCTACGTGCATAATGAGAGGAAGAAGTTATAGTCCATCACCGCCTCGGGGTTATGGTAGAAGAGGAAGAAGTCCTAGCCCCAGGGGTCGTTATGGGGGCCATGGCAGAGATCTCCCTACCAGCCTTCTAGTCCGCAACCTACGCCACGATTGTAGGCCTGAGGATCTTCGTAGACTGTTTGGACAATTTGGTGCTCTTAAGGACATTTACATTCCGAAGGATTATTATACTGGTGAACCTCGTGGCTTTGGTTTTGTCCAATATGTAGATCCTGCTGATGCTGCAGATGCTAAATATCATGTTGATGGTCAAATCCTGCTTGGTCGAGAGTTGACTGTTGTATTTGCTGAGGAGAATAGAAAGAAGCCAAATGAGATGAGGGCAAGAGAACGAAGGGGCCATTTTTCTGACCGAAGAAGGTCTCCTCCTCGTTATTCCCGATCACCACCACGTCATAGATCTCGGTCTCGAAGTCGTGATTATTATTCCCCTCCTCCCAAACGAAAGGAGTATTCAAGATCTGTGTCACCTCAAGATAGAAGATACAGTCGAGAAAGAGAAAAGTCATATTCACAGCAGAGTAGGGAGAGATCATACTCACGTTCTCCGCCGTATAATGGTGGCTCAAGGAGCCGTAGTCAGAGTCCAGCTAAAGGCCCAAGCAGGAGCCGAAGTCAGAGTCCGAATCATGCTGATTATCCAAGCAGGGATCCAGCCCGTGGTAGGTCCCCCAGTCAATGA 1002 0.475 MQRTVFQPQCLHSPLRSELCSPASSVSCGFRRWRCDLSLVFGVVKLPPLLIFSGASSAFGDYRLRDLVLKNCNACTNIGRCDKCIHLSTCIMRGRSYSPSPPRGYGRRGRSPSPRGRYGGHGRDLPTSLLVRNLRHDCRPEDLRRLFGQFGALKDIYIPKDYYTGEPRGFGFVQYVDPADAADAKYHVDGQILLGRELTVVFAEENRKKPNEMRARERRGHFSDRRRSPPRYSRSPPRHRSRSRSRDYYSPPPKRKEYSRSVSPQDRRYSREREKSYSQQSRERSYSRSPPYNGGSRSRSQSPAKGPSRSRSQSPNHADYPSRDPARGRSPSQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1716 333 MobiDBLite consensus disorder prediction 282 319 - -
Dere03g1716 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 198 IPR000504 GO:0003723
Dere03g1716 333 MobiDBLite consensus disorder prediction 209 231 - -
Dere03g1716 333 MobiDBLite consensus disorder prediction 209 333 - -
Dere03g1716 333 Gene3D - 95 219 IPR012677 -
Dere03g1716 333 MobiDBLite consensus disorder prediction 242 281 - -
Dere03g1716 333 SUPERFAMILY RNA-binding domain, RBD 127 232 IPR035979 GO:0003676
Dere03g1716 333 MobiDBLite consensus disorder prediction 98 124 - -
Dere03g1716 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 205 IPR000504 GO:0003723
Dere03g1716 333 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 126 312 - -
Dere03g1716 333 SMART rrm1_1 128 201 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1716 Dere-ChrDere03 28043573 28049893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1716 94 190 Eukaryotic Initiation Factors Gene Family AT3G11400 36.792 3.74e-09 55.5