Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1701 ATGAGAAAGCCGTCGAAGTCGAAGTACACGTCGTCGTCACGGGGAGCAGAAGGAGGAGGTGGAAATGGGAATGGAAGTAAGACGACGCCGTGCTGCAGCAAGGTGGGGCTGAAGAGAGGGCCGTGGACGCCGGAGGAGGACGAGCTGCTCAGTAAGTACATAGAGAAGGAAGGAGAAGGCAGGTGGCGGACTCTGCCTAAGCGAGCGGGGCTGCTTCGGTGCGGCAAGAGCTGCCGCCTCCGGTGGATGAACTATCTCCGCCCCTCCGTAAAGCGTGGCCACATCGCCCCTGACGAGGAAGATCTCATCCTCCGCCTCCACCGTCTCCTCGGCAACCGGTGGTCTCTGATTGCAGGCAGGATCCCAGGAAGAACTGATAATGAGATCAAGAACTATTGGAACACCCATCTCAGCAAGAAGCTCATCAGCCAAGGCATTGATCCCCGAACCCACAAGCCTCTTAACCCTAATAATCCATCAACTACTGATACTATTACGAGTACATATCATCATCATCATAACCATCACCTTGCCAAGCCACCTTCTGATAATTCATCCAAACCCACTACTACTCCTAAACCAAATCCCAATCCTAACCCTAGTCCTCCAGATACTGAGCAGGATTTCAATCCCTACATTCACACCAATTCTCCTCATCACTTGGATCCATATAATCAAGCTGCTTCCTTAGCCGCAGCTACCACCAATGGCTATGGGGATGGGGATCTTCCTGCAGCTGCTGCCGCTGAAGTTCCCTTCACTACCACTACCACTACCACTACCACTTGCACCACCACCAACAACAATAATGATGTGCTTCCCAATGAAGAAGCTGAGGATGATATCAATTACTGTACCGATGATGTTTTCTCCTCCTTCCTCAACTCATTGATCAACGACGATGCTTTTTCTGCCCACCAACTACAGCAGCAACAGCAACAGCAACAGCATCAGCACCCTCCACCACCTCCTTGTAATGGCCTTGGTGTCGTCTGGGAATCCACGCTCATCTCCGCCCATAGTGACCCCAACAATATGGTTGATGCAGATCGTGTCCACTAG 1062 0.5179 MRKPSKSKYTSSSRGAEGGGGNGNGSKTTPCCSKVGLKRGPWTPEEDELLSKYIEKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPNNPSTTDTITSTYHHHHNHHLAKPPSDNSSKPTTTPKPNPNPNPSPPDTEQDFNPYIHTNSPHHLDPYNQAASLAAATTNGYGDGDLPAAAAAEVPFTTTTTTTTTCTTTNNNNDVLPNEEAEDDINYCTDDVFSSFLNSLINDDAFSAHQLQQQQQQQQHQHPPPPPCNGLGVVWESTLISAHSDPNNMVDADRVH 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1701 353 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Dere03g1701 353 MobiDBLite consensus disorder prediction 1 37 - -
Dere03g1701 353 CDD SANT 97 137 IPR001005 -
Dere03g1701 353 MobiDBLite consensus disorder prediction 306 329 - -
Dere03g1701 353 MobiDBLite consensus disorder prediction 8 31 - -
Dere03g1701 353 MobiDBLite consensus disorder prediction 145 223 - -
Dere03g1701 353 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 29 254 - -
Dere03g1701 353 MobiDBLite consensus disorder prediction 150 167 - -
Dere03g1701 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Dere03g1701 353 MobiDBLite consensus disorder prediction 206 223 - -
Dere03g1701 353 SUPERFAMILY Homeodomain-like 36 133 IPR009057 -
Dere03g1701 353 FunFam Myb transcription factor 36 92 - -
Dere03g1701 353 ProSiteProfiles Myb-like domain profile. 34 86 IPR001005 -
Dere03g1701 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Dere03g1701 353 SMART sant 91 139 IPR001005 -
Dere03g1701 353 SMART sant 38 88 IPR001005 -
Dere03g1701 353 Gene3D - 96 195 - -
Dere03g1701 353 FunFam transcription repressor MYB5-like 96 163 - -
Dere03g1701 353 Gene3D - 39 91 - -
Dere03g1701 353 MobiDBLite consensus disorder prediction 191 205 - -
Dere03g1701 353 CDD SANT 41 86 IPR001005 -
Dere03g1701 353 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Dere03g1701 353 Pfam Myb-like DNA-binding domain 97 137 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1701 Dere-ChrDere03 27871063 27872270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1701 27 158 MYB Transcription Factor Family AT3G13540 85.606 3.72e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere03g1701 Myb_DNA-binding 1.4e-14 CL0123