Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1698 ATGAATCTCTACCTCTTTCTTACACTACCATTGAGCGAAAACTTGTGGCTAGATGTGTCAGCAGGCATGGCGATTCCTTTTTCCCCTCCATTTTCTAAGGGAGACATATCCAAGGTAACATTTGCAATGGACAAAAAGAAACGAGAGAAAGCCATGAAGAATGGCAAAAGCAAGTTCCTTGGTGTGAGACAAAGGCCTTCTGGGAAATGGGTAGCCGAGATCAAAGACACTACACACAAGATTCGATTGTGGCTTGGCACCTATCTTACTCCTGAGGAAGCTGCTCGTGCTTATGACGAAGCTGCCTTCCTCCTTAGAGGTTCTAATACTCGAACCAACTTCCCTGCTCATGTTGCTTCCAACTCTCCTATCTCTCTCAAAATCAAAAGCCTCCTTCCTCGTATTCATACTAACAAAACCCCATTTACCACAACCCCATCTGCCAAATCCACAGCTCAACATGCCTCTGCTTCTGGTGCTCAAAACCAGAATCATCATCATCCATATAGACCAGATATTTTGATTGATTGTTCTTCAATGGGTCTTGCACTAGACTCAGCTCAGTTTGATCATTCTTGGCCTTGTGCCGTTGGGTTTGACTTCGAGCACATCCCATCAGCAACCCAAGAAGGAATCGATATGAATGGTTTATTATGTTCAGGCACTAAGGAGACTGAGTTAACAGAGCTTGAAGGGAAGAAGGGAGTGAATGAGTGGCATATGGAGAATGCTTCTGATGTCAATGGTGCTTTGTGGGACTCGTACACTCTTTCTCACATGCAAGAAATATTTGTTCACAGGATCTCACGCCGTCAGCTTCACCTCCTCGGCTTCACGACCACTCTCGCCGACCTCCACGTTCCACTGCGAGACCCCTCCTCCACTCGCAATAGGTTGCTTACTACTTGCCTCTTGGGTAGGAGCAACAGCTTCGTTAAAAATATGAACGTAAGAACAGGTTTTGACGTTTTGATACAGAGGAACTTCATGGGTTATCTTTCATATGGCAGACATGCTCTTCAGCAGATTATTGGAAATGCTAAACCCCAGAGCTCTTCTCATAGTGTGGTAAACCCACTGTTATATGCTTGTCAAGGACTTAGATACAGGAAACTGGAAGTCATCCTCACAACGAGTACAGATAAGCTTGGAAAGGCAGGTGAGACAGTGAAAGTTGCTCCTGGATATTTTCGCAACCACCTAATGCCCAAGCTGCTCGCTGTGCCAAATATTGACAAGTTTGCTTATCTCATCAGGGAGCAGCGCAAGATCTATCAACCTGCTGAAGAAGAAGAAGAAAAAGAAGAAGTTAAAGTATATGAAGATTCGAAGGAAGATAAGATGAAAGAGTATGAAAAGGCAGCACTGCGCCTTGCTAAAGCTAAGCTGGTCTTGCGGAGGTTCATCGATGCTGAGAAAGCAAAATCACGTGCAACAAAAGATGAGCCCTTGGAATTGCGTAAAGCTGTAACAAAAGAAGATCTTGTGGCTGAGGTGGCAAGACAGCTTTGTGTGAATATTTCCCCTGTTAATCTGCATCTTCCAACGCCTTTACCAACGGTGGGTGAATATGAGGTGCCACTGCTCTTACCAAGGTCCATTCCTTTACCAGAGGGGACGATTAACTGGGGTCTCAAAGTTAAAATTCGGAGTAAATAA 1659 0.4467 MNLYLFLTLPLSENLWLDVSAGMAIPFSPPFSKGDISKVTFAMDKKKREKAMKNGKSKFLGVRQRPSGKWVAEIKDTTHKIRLWLGTYLTPEEAARAYDEAAFLLRGSNTRTNFPAHVASNSPISLKIKSLLPRIHTNKTPFTTTPSAKSTAQHASASGAQNQNHHHPYRPDILIDCSSMGLALDSAQFDHSWPCAVGFDFEHIPSATQEGIDMNGLLCSGTKETELTELEGKKGVNEWHMENASDVNGALWDSYTLSHMQEIFVHRISRRQLHLLGFTTTLADLHVPLRDPSSTRNRLLTTCLLGRSNSFVKNMNVRTGFDVLIQRNFMGYLSYGRHALQQIIGNAKPQSSSHSVVNPLLYACQGLRYRKLEVILTTSTDKLGKAGETVKVAPGYFRNHLMPKLLAVPNIDKFAYLIREQRKIYQPAEEEEEKEEVKVYEDSKEDKMKEYEKAALRLAKAKLVLRRFIDAEKAKSRATKDEPLELRKAVTKEDLVAEVARQLCVNISPVNLHLPTPLPTVGEYEVPLLLPRSIPLPEGTINWGLKVKIRSK 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1698 552 MobiDBLite consensus disorder prediction 137 165 - -
Dere03g1698 552 CDD AP2 57 117 IPR001471 GO:0003700|GO:0006355
Dere03g1698 552 Gene3D AP2/ERF domain 57 117 IPR036955 GO:0003700|GO:0006355
Dere03g1698 552 Gene3D - 372 415 IPR036935 -
Dere03g1698 552 FunFam ethylene-responsive transcription factor RAP2-11 57 116 - -
Dere03g1698 552 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
Dere03g1698 552 Pfam AP2 domain 58 107 IPR001471 GO:0003700|GO:0006355
Dere03g1698 552 FunFam 50S ribosomal protein L9 372 435 - -
Dere03g1698 552 Coils Coil 430 450 - -
Dere03g1698 552 PANTHER 50S RIBOSOMAL PROTEIN L9 348 550 IPR000244 GO:0003735|GO:0005840|GO:0006412
Dere03g1698 552 Pfam Ribosomal protein L9, N-terminal domain 373 409 IPR020070 -
Dere03g1698 552 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Dere03g1698 552 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Dere03g1698 552 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Dere03g1698 552 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Dere03g1698 552 SUPERFAMILY L9 N-domain-like 372 424 IPR009027 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1698 Dere-ChrDere03 27845466 27851241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1698 45 132 AP2-EREBP Transcription Factor Family AT5G19790 71.591 2.06e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere03g1698 AP2 8e-12 CL0081