Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1675 ATGAAGGCCTGGTCGGCAAAAATCCTGAAGTTGACATCACACCCAAATCCGAATTTCCGGAAAAACAGAATTCTCTTCCACTCTTTCCATCATCAAAGCCTCCCACAAAAACCATTTCACATTATACTTTTCTGTTGTTATCTCTTTCTAGCTCTCACATCCAAATCATGTTTTCCAAACATTTTTGCTTCTTGTGATGGGTTGTCGGTAAAGGAGCTAGCGGGTGGCTGGCTCTATCTGATCTTGCTTATAATGGGAAACTGCTGGTTTTCTAGAGAATCCTCAGTTTACAGAGTCTCATCCAATGCAAAGTCAGATTCCCCAAAGGACCAAACCCATGCAATCAAACCAAGGAATGATGATAGTAAGTTACCATCCAATCCCGAAGAAGTAGAAATCCTACGCCGTGATTCAGCTGCAAATCCTTTGATTGCCTTCACATATGATGAACTAAAGGTAATCACTGGAAATTTTAGGCATGATCATCTCTTGGGTGGAGGAGGATTCGGAAGTGTTTATAAAGGGTTTATTTCTGAGGACGTAAGAGAGGGACTTCCTTCTCTTCCTGTAGCTGTTAAGGTACATGATGGTGACAACAGTCATCAAGGGCACAGAGAATGGCTGGCTGAAGTCATATTTCTCGGGCAGCTTTCTCATCCAAATTTGGTCAAATTAATTGGATACTGCTGTGAAGACGAACATAGGGTGCTAATATATGAGTATATGGCCCGTGGTAGTGTGGAAAACAATCTCTTCTCCCGAGTATTGCTTCCCTTGCCATGGTCCATACGAATGAAGATTGCATTTGGCGCTGCCAAGGGACTAGCATTTCTTCATGAAGCAGAGAAGCCTGTCATTTATCGTGATTTTAAGACATCAAATATTTTATTGGACCTGGACTACAATGCAAAACTCTCTGACTTTGGGCTTGCTAAGGATGGACCTGTTGGTGACAAATCTCATGTCTCTACTCGCATAATGGGGACTTATGGGTATGCTGCACCTGAATACATATTGACAGGTCATCTAACCCCTAGAAGTGATGTGTACAGTTTTGGCGTCGTTCTTCTTGAACTTCTAACTGGAAGAAAATCTCTAGACAAGTCGCGACCTGCTCGGGAGCAGAACCTTACAGATTGGGCTCTTCCTTTGCTAAAGGAAAAGAAGAAATTCTTGAATATAGTTGATCCAAAGCTGGAAGGCGATTATCCAATAAAAGGAGTTCACAAGGCTGCAATGCTGGCATATCATTGCTTAAACCGCAATCCAAAAGCAAGGCCATTGATGCGAGATATAGTAGATTCACTGGAGCCTTTGCAGCTTCACAATGAGGTTTCTTTTGGAAAAACATTGACCATCATCAGTGAAGTTCCTCAACCCGAATTGAAGAGGAAAGATGCAGAGTAA 1407 0.4229 MKAWSAKILKLTSHPNPNFRKNRILFHSFHHQSLPQKPFHIILFCCYLFLALTSKSCFPNIFASCDGLSVKELAGGWLYLILLIMGNCWFSRESSVYRVSSNAKSDSPKDQTHAIKPRNDDSKLPSNPEEVEILRRDSAANPLIAFTYDELKVITGNFRHDHLLGGGGFGSVYKGFISEDVREGLPSLPVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLIGYCCEDEHRVLIYEYMARGSVENNLFSRVLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDLDYNAKLSDFGLAKDGPVGDKSHVSTRIMGTYGYAAPEYILTGHLTPRSDVYSFGVVLLELLTGRKSLDKSRPAREQNLTDWALPLLKEKKKFLNIVDPKLEGDYPIKGVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLQLHNEVSFGKTLTIISEVPQPELKRKDAE 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1675 468 MobiDBLite consensus disorder prediction 101 127 - -
Dere03g1675 468 Pfam Protein tyrosine and serine/threonine kinase 161 436 IPR001245 GO:0004672|GO:0006468
Dere03g1675 468 ProSitePatterns Protein kinases ATP-binding region signature. 164 193 IPR017441 GO:0005524
Dere03g1675 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Dere03g1675 468 MobiDBLite consensus disorder prediction 109 127 - -
Dere03g1675 468 ProSiteProfiles Protein kinase domain profile. 158 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1675 468 Gene3D Transferase(Phosphotransferase) domain 1 242 452 - -
Dere03g1675 468 Gene3D Phosphorylase Kinase; domain 1 120 241 - -
Dere03g1675 468 PANTHER OS01G0588500 PROTEIN-RELATED 112 440 - -
Dere03g1675 468 FunFam Serine/threonine-protein kinase BIK1 125 241 - -
Dere03g1675 468 SUPERFAMILY Protein kinase-like (PK-like) 132 436 IPR011009 -
Dere03g1675 468 FunFam Probable serine/threonine-protein kinase PBL8 242 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1675 Dere-ChrDere03 27606883 27613888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1675 87 436 Glycoside Hydrolase AT3G07070 47.107 2.25e-105 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere03g1675 PK_Tyr_Ser-Thr 3.8e-44 CL0016