Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1631 ATGGACAGCGTCTTCTCCTTCCCCGAAGCCGCAAGACATCATTTCCTCCATTCTGCATTGGACTCTCTTGGCTGCACTTACATTTGCCTCTGGTCCTACAGTTCCTCATCCAATCGATTGCGTTTCTTGGATGGTTTCTACAACGTACCAAACAACCAAGCAAGCTCTTCTTCGGGGAGTGTTGATCGTAGGCTTTTGGACCGATATAGGGGTTTGGAGTTTGATGTCTCTTCGGATAACCGCCTTCCAGGACTAGCATTTCGGAACCACCAGTCCTTCCTGGAGCTGCAACAATCTGATCTCCTAAGACTGGCATGGACTGATATACAAAGGCAATTCTTCCAGGAAGCAAGGATTAAGACTACTGTTTTCTTGGGATGCAGCAATGGGGAAATTGAACTCGGGTTCTCAACTATCTCTCAAGGCGACATTCAAACAGATGTTCCAGAAGAATTTTCTAGACATTCCCATCCAATTGAACAGAACAATCCACTTTCATCTTCTTCGTCTTCTTTGAGATCATTATCCACTGGTAGCCCCGAATCCTATTCCCTCCTAATCGGTAATGTTCCGGGCACTTCACTATTTCCCGATATGATGCTGATACAGCCAGAGAGTGAACATGATGCGATAATAAAAGCACTCCTTCATGTTATATCTTCGCCTTCTTCTCATTCAACCTCTCATCAGCAAAATTTGCCTCATTCGCATCCTGAAAGAGTTAGTGCTTTTAAGAGGTATAGTCCCTCCCAAATGGGGACCAAACCCAATTTGCGCAGGCAAAGCTTGATGAAGAAATCTTTCCAAGTGTTTCGAGGCTTAAATTTCATGAGAATGAGAGAACGTATTCAAGCAACCCGTCCCACTAGTACCCAAATCCATCATATGATATCAGAACGAAGAAGGCGTGAGAAACTCAATGAGAATTTTCAGGCACTTAGATCACTGCTCCCTCCAGGAACCAAGAAAGATAAAGCATCAATACTTACAGCAGCGAGGGAGACATTGAGATCCTTCGTGGCTGAGAACGACAAGGTGACCAAAAGAAATCAGCAAGTCGAGGCACAAATATTGGCAGCCAAGGAATTAACAAGTGAGAAAACCAAAAGTAGTTCCGCCGATGAAAGAACATTGAATGTGCGACTGTCACATGTGCCAGGGTCGAGCTCATCAGGAGAAAGATTCATCGACCTGCACGTGACTGTGGGAGCACAAAGTTATTCTCAGCTTCATATATTGATTCGCCTATTGGAATTCTTGAAGGAAGTTCAGCCAGCAAGCTTAATTTCTATGAGCGCTAACACACATATAGCACAAGGGACTGCCTTCATCGAAGTGACCTTAAGACTAAAAATTGAGGTACGTACATATACGAACCCAAAGTCTAGTAGCAGTTCATAA 1401 0.4411 MDSVFSFPEAARHHFLHSALDSLGCTYICLWSYSSSSNRLRFLDGFYNVPNNQASSSSGSVDRRLLDRYRGLEFDVSSDNRLPGLAFRNHQSFLELQQSDLLRLAWTDIQRQFFQEARIKTTVFLGCSNGEIELGFSTISQGDIQTDVPEEFSRHSHPIEQNNPLSSSSSSLRSLSTGSPESYSLLIGNVPGTSLFPDMMLIQPESEHDAIIKALLHVISSPSSHSTSHQQNLPHSHPERVSAFKRYSPSQMGTKPNLRRQSLMKKSFQVFRGLNFMRMRERIQATRPTSTQIHHMISERRRREKLNENFQALRSLLPPGTKKDKASILTAARETLRSFVAENDKVTKRNQQVEAQILAAKELTSEKTKSSSADERTLNVRLSHVPGSSSSGERFIDLHVTVGAQSYSQLHILIRLLEFLKEVQPASLISMSANTHIAQGTAFIEVTLRLKIEVRTYTNPKSSSSS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1631 466 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 288 359 IPR036638 GO:0046983
Dere03g1631 466 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 290 339 IPR011598 GO:0046983
Dere03g1631 466 Gene3D - 289 365 IPR036638 GO:0046983
Dere03g1631 466 SMART finulus 296 345 IPR011598 GO:0046983
Dere03g1631 466 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 107 453 IPR044658 -
Dere03g1631 466 MobiDBLite consensus disorder prediction 151 176 - -
Dere03g1631 466 CDD bHLH_AtbHLH_like 295 334 IPR045239 -
Dere03g1631 466 MobiDBLite consensus disorder prediction 158 176 - -
Dere03g1631 466 Pfam Helix-loop-helix DNA-binding domain 294 337 IPR011598 GO:0046983
Dere03g1631 466 Coils Coil 336 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1631 Dere-ChrDere03 26918418 26920507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1631 1 453 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 35.203 1.31e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere03g1631 HLH 2.2e-10 No_clan