Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1624 ATGGGAGCTATCAACCACCGTCTCCTTGTCTTTGATTTTTCTCCCATCAATAACCACGCATCATCCAAAGTCATGGCAGGAGTAGCACCCGAAGGTTCACAATATGATGCTCGTCAATATGATTCCAAAATGAATGAATTGCTTACTGCTGATGGGCAGGATTTCTTTACATCTTATGATGAGGTTTATGATAGTTTTGATGCTATGGGCTTGCAAGAGAATCTTCTCAGAGGCATTTACGCATATGGGTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCCTTCTGCAAAGGACTTGATGTTATTCAGCAGGCTCAGTCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGGATTTTGCAGCAGCTTGACTATGGTTTGATGGAATGCCAGGCCTTGGTTTTAGCACCAACTCGAGAACTTGCTCAGCAGATTGAGAAGGTTATGCGAGCCCTTGGAGATTATCTTGGTGTGAAGGTGCATGCATGTGTGGGAGGAACTAGTGTCCGTGAAGACCAACGTATTCTATCAAGTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTATTTGACATGCTGCGCAGGCAATCACTTCGGCCAGATTACATCAGGATGTTTGTCTTGGATGAGGCAGATGAAATGCTTTCTCGAGGTTTCAAAGATCAGATCTATGATATATTCCAGCTACTTCCATCCAAGATTCAGGTGGGAGTTTTTTCTGCTACAATGCCTCCTGAGGCTCTGGAGATCACTAGGAAGTTCATGAACAAGCCTGTTAGGATTCTCGTGAAGCGTGATGAGCTCACCCTGGAGGGTATAAAACAGTTTCATGTCAATGTTGAGAGAGAGGAATGGAAGCTGGATACACTCTGCGATCTTTATGAGACATTAGCCATCACACAGAGCGTCATTTTTGTGAATACCAGAAGGAAGGTTGATTGGCTTACTGACAAAATGCGAAGCCGGGATCACACGGTTTCAGCAACCCATGGAGACATGGACCAGAATACCAGAGACATTATTATGCGTGAATTCCGTTCTGGATCTTCTCGTGTTTTAATAACAACTGATCTTTTGGCCCGTGGTATTGATGTCCAGCAAGTGTCACTAGTTATTAATTATGATCTCCCTACTCAGCCTGAGAACTATCTCCATCGTATTGGCCGTAGTGGGAGGTTTGGCAGGAAAGGTGTTGCAATCAATTTCGTGACAAAGGATGATGAAAGAATGCTGTTTGATATCCAGAGGTTTTATAATGTGATAATTGAGGAGCTGCCGTCTAATGTTGCCGAACTCCTCTAA 1314 0.4406 MGAINHRLLVFDFSPINNHASSKVMAGVAPEGSQYDARQYDSKMNELLTADGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLMECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQRFYNVIIEELPSNVAELL 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1624 437 PANTHER RNA HELICASE 46 421 - -
Dere03g1624 437 FunFam Eukaryotic initiation factor 4A-III 272 437 - -
Dere03g1624 437 FunFam Eukaryotic initiation factor 4A-II 52 271 - -
Dere03g1624 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 418 IPR027417 -
Dere03g1624 437 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 276 437 IPR001650 -
Dere03g1624 437 Gene3D - 272 437 IPR027417 -
Dere03g1624 437 CDD DEADc_EIF4A 68 266 - -
Dere03g1624 437 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 64 92 IPR014014 GO:0003724
Dere03g1624 437 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 95 265 IPR014001 -
Dere03g1624 437 SMART helicmild6 317 398 IPR001650 -
Dere03g1624 437 CDD SF2_C_DEAD 277 407 - -
Dere03g1624 437 SMART ultradead3 83 280 IPR014001 -
Dere03g1624 437 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 211 219 IPR000629 -
Dere03g1624 437 Pfam DEAD/DEAH box helicase 89 250 IPR011545 GO:0003676|GO:0005524
Dere03g1624 437 Gene3D - 54 271 IPR027417 -
Dere03g1624 437 Pfam Helicase conserved C-terminal domain 290 398 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1624 Dere-ChrDere03 26791496 26794675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1624 25 437 Eukaryotic Initiation Factors Gene Family AT1G72730 88.164 0.0 765