Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1610 ATGAAAATGAGAAATTATATACAAGTTACTGGTGCTGGAAATAACACAGAGAAAGTCAAATGCATACTTGTACCAGTGAAGATAATAAATAGAGTAGATGAAGAAGATAGACAACTTCAAAATACGGACGCAGAGGGAGTTAATAGGAAACAATGTGATATACTAAGGAAGAGAGTAAGGTGGAGTGAGTCCAACACAACCATAGGCTCACAACATCACACATTCACTTCCCATAGGCCTAGGAGCGTTGGGAAAAAGAGAGACACAGATATGGGAAGAAGCCCTTGTTGTTCCAAGGAGGGCTTGAACAGAGGAGCTTGGACTGCTCACGAAGACAAAATCCTCAGAGACTACATTACTGCCCATGGTGAAGGAAGATGGCGAAACCTTCCCAAACGAGCAGGTTTGAGAAGATGTGGGAAGAGTTGCAGACTCCGATGGTTGAACTATCTCAGACCAGATATTAAGAGAGGCAATATATCCCCAGATGAAGAAGAGCTTATCATCCGCCTTCACAAGCTCTTGGGAAACAGATGGTCTTTAATAGCAGGGAGGCTTCCAGGGCGAACAGACAATGAAATAAAGAACTACTGGAACACGAATTTAAGTAAGAGAGTTACAGATCATCGACACCAGTACAATGTTGCTTCGTCTGGAAGACTGTCTGCTAAACCCAAGAACAACAAGAGCTCCAAAAATAATAATCCTATGACCCAATCTAACCCCATACCTTCTCCAAATTACAAGCTCAAAGAATCTCTTTCACTGTCCCATGTGGTTCATACAAAGGCAACGAAGTGCTCCAGGGTGTTCATAAACCCACGTCCTCCATCGTCAAGGCAACTCCTGCACAAGAACCGATCTGAAACAGAGGCATTTCTTCATGTGGATGCTGCTGCTGCTGTTGGTAACATTCCGAGCAGTGACGAAACGGCGGGACTGCTCGATGCGTACGACAATAACTGGTCGTTGTGGTTTGGCGGAGGGAAGGATCGTCCGGAGCTGTCGTCTACAGATTTGCTGGCGGATTTCAACATGGGAGAGCTTTGCTTGTCGGATCTTCTGAACTCGGAATTCTCAGAAATGTGCGACTTCAGTACTTACAGTAACAACAACAGCATCGACGGCGTATTATCGCCGTCTTCCGACCAACCTTTGGTGTTCTCCGACGAGATTCTCAACGACTGGACACAGAGCAACGCCCAAGACACAAATGTGGCCACTAATCTTCACTCTTTCTCTTCCTTTCTTGAATCCAGTGAGGAATGGCTAGCAGAGTAA 1281 0.4528 MKMRNYIQVTGAGNNTEKVKCILVPVKIINRVDEEDRQLQNTDAEGVNRKQCDILRKRVRWSESNTTIGSQHHTFTSHRPRSVGKKRDTDMGRSPCCSKEGLNRGAWTAHEDKILRDYITAHGEGRWRNLPKRAGLRRCGKSCRLRWLNYLRPDIKRGNISPDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLSKRVTDHRHQYNVASSGRLSAKPKNNKSSKNNNPMTQSNPIPSPNYKLKESLSLSHVVHTKATKCSRVFINPRPPSSRQLLHKNRSETEAFLHVDAAAAVGNIPSSDETAGLLDAYDNNWSLWFGGGKDRPELSSTDLLADFNMGELCLSDLLNSEFSEMCDFSTYSNNNSIDGVLSPSSDQPLVFSDEILNDWTQSNAQDTNVATNLHSFSSFLESSEEWLAE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1610 426 SMART sant 103 153 IPR001005 -
Dere03g1610 426 SMART sant 156 204 IPR001005 -
Dere03g1610 426 CDD SANT 106 151 IPR001005 -
Dere03g1610 426 ProSiteProfiles Myb-like domain profile. 152 202 IPR001005 -
Dere03g1610 426 Gene3D - 160 240 - -
Dere03g1610 426 Gene3D - 104 156 - -
Dere03g1610 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 151 IPR017930 -
Dere03g1610 426 ProSiteProfiles Myb-like domain profile. 99 151 IPR001005 -
Dere03g1610 426 SUPERFAMILY Homeodomain-like 102 198 IPR009057 -
Dere03g1610 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 206 IPR017930 -
Dere03g1610 426 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 91 265 - -
Dere03g1610 426 CDD SANT 161 202 IPR001005 -
Dere03g1610 426 FunFam MYB-related transcription factor 103 156 - -
Dere03g1610 426 Pfam Myb-like DNA-binding domain 104 151 IPR001005 -
Dere03g1610 426 Pfam Myb-like DNA-binding domain 157 202 IPR001005 -
Dere03g1610 426 MobiDBLite consensus disorder prediction 215 248 - -
Dere03g1610 426 MobiDBLite consensus disorder prediction 70 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1610 Dere-ChrDere03 26671083 26674326 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1610 91 209 MYB Transcription Factor Family AT4G09460 70.588 2.49e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere03g1610 Myb_DNA-binding 6.8e-13 CL0123