Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1601 ATGACAGCAAGTCTGAAATTGGTTTGTAGATCACAGCCACGGCGACGGCAACGGAAACGCCAACCCTTGGTGTTTAGATCCGCTGCCTCTGCATTTTCACTTTGCAACTCATTTTCGACAATGGCGACCCAGATGAGCAAGAAGAGAAAGTTCGTAGCCGATGGAGTTTTCTTCGCTGAGCTGAATGAGGTTCTGACCAGAGAGCTTGCTGAGGATGGATACTCCGGTGTCGAGGTTAGGGTTACCCCAATGCGGACCGAGATCATTATTAGAGCCACTAGAACTCAGAACGTCCTTGGTGAGAAGGGAAGGAGAATTAGGGAGCTGACCTCAGTTGTACAGAAGAGATTTAAGTTTCCCGAAAATAGCGTGGAACTATATGCTGAGAAAGTCAACAACAGGGGTCTTTGCGCTATTGCCCAGGCAGAGTCTCTTCGCTACAAGCTTCTTGGTGGTCTCGCTGTACGGAGGGCTTGCTATGGTGTTTTGAGATTTGTTATGGAAAGTGGCGCCAAGGGATGTGAGGTTATTGTAAGTGGAAAATTGAGAGCTCAGCGAGCCAAGTCCATGAAATTCAAGGATGGATACATGATTTCTTCCGGCCAGCCAGTCAAGGATTACATTGACTCTGCAGTAAGACATGTACTTCTAAGACAGGGTGTTCTTGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCTAAAGGGAAGCAAGGTCCCAAAACTCCCCTCCCTGATATTGTCACCATTCACACTCCAAAGGAGGAGGAGGAATACAGCCGGCCTACTGCTATTTTGGCAACTGATATTGAGGTCCCTGTTGCTTGA 828 0.4783 MTASLKLVCRSQPRRRQRKRQPLVFRSAASAFSLCNSFSTMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYSRPTAILATDIEVPVA 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1601 275 Gene3D - 38 131 IPR015946 -
Dere03g1601 275 CDD KH-II_40S_S3 45 135 - -
Dere03g1601 275 FunFam 40S ribosomal protein S3 133 268 - -
Dere03g1601 275 ProSiteProfiles Type-2 KH domain profile. 61 132 IPR004044 GO:0003723
Dere03g1601 275 ProSitePatterns Ribosomal protein S3 signature. 187 223 IPR018280 -
Dere03g1601 275 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 46 238 - -
Dere03g1601 275 FunFam 40S ribosomal protein S3 41 132 - -
Dere03g1601 275 Gene3D - 133 259 IPR036419 -
Dere03g1601 275 NCBIfam 30S ribosomal protein S3 48 250 IPR005703 GO:0003735|GO:0006412|GO:0015935
Dere03g1601 275 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 50 139 IPR009019 GO:0003723
Dere03g1601 275 SUPERFAMILY Ribosomal protein S3 C-terminal domain 133 231 IPR036419 -
Dere03g1601 275 Pfam Ribosomal protein S3, C-terminal domain 146 228 IPR001351 GO:0003735|GO:0006412
Dere03g1601 275 Pfam KH domain 60 133 IPR004044 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1601 Dere-ChrDere03 26539243 26543351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1601 41 275 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 87.234 2.57e-153 426